STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3388Hypothetical protein; No significant database matches. (184 aa)    
Predicted Functional Partners:
ECA3389
Similar to Ralstonia solanacearum probable integrase/recombinase protein rsp0090 or rs05531 SWALL:Q8XTL6 (EMBL:AL646076) (347 aa) fasta scores: E(): 3e-54, 48.59% id in 321 aa, and to Bacillus halodurans integrase/recombinase codv or bh2465 SWALL:Q9KA25 (EMBL:AP001515) (303 aa) fasta scores: E(): 1.1e-28, 35.85% id in 304 aa. Also similar to ECA3399 (93.824% id), ECA3406 (91.150% id), ECA3415 (91.150% id), ECA4283 (68.421% id), ECA4292 (68.421% id); Belongs to the 'phage' integrase family.
       0.463
ECA3386
Hypothetical protein; No significant database matches.
       0.415
ECA3387
Similar to Neisseria meningitidis hypothetical protein Nma1078 SWALL:Q9JUY9 (EMBL:AL162755) (122 aa) fasta scores: E(): 5.7e-08, 49.27% id in 69 aa.
       0.415
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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