STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3408Putative phage regulatory protein; Similar to Vibrio phage CTX RstR SWALL:Q8LTJ3 (EMBL:AF511000) (112 aa) fasta scores: E(): 0.024, 32% id in 100 aa, and to Stigmatella aurantiaca putative transcriptional repressor SWALL:Q93TW4 (EMBL:AF319998) (119 aa) fasta scores: E(): 0.001, 30.35% id in 112 aa. (131 aa)    
Predicted Functional Partners:
ECA3407
DnaG primase-like protein; Similar to Photorhabdus luminescens DnaG primase-like DnaG SWALL:AAN64202 (EMBL:AY144117) (925 aa) fasta scores: E(): 2.1e-145, 73.72% id in 921 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase DnaG or DnaP or ParB or b3066 or z4419 or ecs3949 or sf3107 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 1.2e-13, 27.89% id in 423 aa. Also similar to ECA3390, (85.082% id), ECA3400 (86.812% id), ECA3416 (100.000% id), ECA4282 (87.010% id), and to ECA4291 (87.010% id).
 
     0.715
ECA4281
Putative phage regulatory protein; Similar to Vibrio phage CTX RstR SWALL:Q8LTJ3 (EMBL:AF511000) (112 aa) fasta scores: E(): 2.7e-06, 33.63% id in 110 aa, and to Photorhabdus luminescens Orf9 SWALL:AAN64201 (EMBL:AY144117) (130 aa) fasta scores: E(): 1.5e-10, 34.42% id in 122 aa.
  
     0.692
ECA4290
Putative phage regulatory protein; Similar to Vibrio phage CTX RstR SWALL:Q8LTJ3 (EMBL:AF511000) (112 aa) fasta scores: E(): 2.7e-06, 33.63% id in 110 aa, and to Photorhabdus luminescens Orf9 SWALL:AAN64201 (EMBL:AY144117) (130 aa) fasta scores: E(): 1.5e-10, 34.42% id in 122 aa.
  
     0.692
ECA3409
Conserved hypothetical protein; Similar to Photorhabdus luminescens Orf8 SWALL:AAN64200 (EMBL:AY144117) (106 aa) fasta scores: E(): 2.9e-08, 39.77% id in 88 aa, and to Salmonella typhimurium putative cytoplasmic protein stm0296 SWALL:Q8ZRK7 (EMBL:AE008708) (82 aa) fasta scores: E(): 1.7e-08, 40% id in 65 aa.
       0.568
ECA3410
Similar to Yersinia pestis hypothetical protein ypo3611 or y0263 SWALL:Q8ZB18 (EMBL:AJ414158) (63 aa) fasta scores: E(): 2e-05, 54.54% id in 44 aa.
       0.568
ECA3406
Similar to Ralstonia solanacearum probable integrase/recombinase protein rsp0090 or rs05531 SWALL:Q8XTL6 (EMBL:AL646076) (347 aa) fasta scores: E(): 3e-52, 48.28% id in 321 aa, and to Photorhabdus luminescens Int SWALL:AAN64203 (EMBL:AY144117) (465 aa) fasta scores: E(): 7.6e-79, 63.66% id in 322 aa. Also similar to ECA3389 (91.150% id), ECA3399 (93.003% id), ECA3415 (100.000% id), ECA4283 (66.765% id), ECA4292 (66.765% id); Belongs to the 'phage' integrase family.
       0.473
ECA3400
DnaG primase-like protein; Similar to Photorhabdus luminescens DnaG primase-like DnaG SWALL:AAN64202 (EMBL:AY144117) (925 aa) fasta scores: E(): 5.1e-145, 74.15% id in 921 aa, and to the C-terminal region of Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase DnaG or DnaP or ParB or b3066 or z4419 or ecs3949 or sf3107 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 9.7e-14, 29.11% id in 395 aa. Also similar to ECA3390, (82.939% id), ECA3407 (86.812% id), ECA3416 (86.812% id), ECA4282 (84.394% id), and to ECA4291 (84.394% id).
  
     0.427
ECA3390
DnaG primase-like protein; Similar to Photorhabdus luminescens DnaG primase-like dnaG SWALL:AAN64202 (EMBL:AY144117) (925 aa) fasta scores: E(): 2.5e-133, 71.76% id in 928 aa, and to the N-terminal region of Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase dnag or dnap or parb or b3066 or z4419 or ecs3949 or sf3107 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 2.7e-13, 29.1% id in 378 aa. Also similar to ECA3400, (82.939% id), ECA3407 (85.082% id), ECA3416 (85.082% id), ECA4282 (80.041% id), and to ECA4291 (80.041% id).
  
     0.415
ECA4282
DnaG primase-like protein; Similar to Photorhabdus luminescens DnaG primase-like DnaG SWALL:AAN64202 (EMBL:AY144117) (925 aa) fasta scores: E(): 1e-213, 73.54% id in 926 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase DnaG or DnaP or ParB or b3066 or z4419 or ecs3949 or sf3107 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 1.8e-13, 27.62% id in 438 aa. Also similar to ECA3390, (79.939% id), ECA3400 (84.394% id), ECA3407 (87.010% id), ECA3416 (87.010% id), and to ECA4291 (100.000% id).
  
     0.408
ECA4291
DnaG primase-like protein; Similar to Photorhabdus luminescens DnaG primase-like DnaG SWALL:AAN64202 (EMBL:AY144117) (925 aa) fasta scores: E(): 1e-213, 73.54% id in 926 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase DnaG or DnaP or ParB or b3066 or z4419 or ecs3949 or sf3107 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 1.8e-13, 27.62% id in 438 aa. Also similar to ECA3390, (79.939% id), ECA3400 (84.394% id), ECA3407 (87.010% id), ECA3416 (87.010% id), and to ECA4282 (100.000% id).
  
     0.408
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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