STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3422Similar to Vibrio cholerae hypothetical protein Vca0019 SWALL:Q9KNE6 (EMBL:AE004345) (295 aa) fasta scores: E(): 0.32, 20.54% id in 219 aa, and to Agrobacterium tumefaciens hypothetical protein atu4349 or agr_l_1031 SWALL:Q8U7V0 (EMBL:AE009363) (320 aa) fasta scores: E(): 0.34, 21.94% id in 319 aa. (305 aa)    
Predicted Functional Partners:
ECA3423
Hypothetical protein; No significant database matches.
       0.801
ECA3421
Rhs protein; Similar to Photorhabdus luminescens Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 2.3e-61, 28.84% id in 1286 aa, and to Escherichia coli RhsB protein precursor RhsB or b3482 SWALL:RHSB_ECOLI (SWALL:P16917) (1411 aa) fasta scores: E(): 2e-25, 24.98% id in 1401 aa.
     
 0.728
ECA3420
Conserved hypothetical protein; Similar to Pediococcus damnosus hsp60 SWALL:Q8KWK2 (EMBL:AF405397) (184 aa) fasta scores: E(): 4.1, 24.65% id in 146 aa.
       0.718
ECA3426
Putative phospholipase; Similar to Serratia liquefaciens extracellular phospholipase A1 precursor PhlA SWALL:PA1_SERLI (SWALL:P18952) (319 aa) fasta scores: E(): 4.2e-06, 30.09% id in 216 aa, and to Xanthomonas campestris phospholipase A1 xcc2722 SWALL:Q8P791 (EMBL:AE012385) (398 aa) fasta scores: E(): 3e-09, 33.82% id in 204 aa.
       0.475
ECA3427
Conserved hypothetical protein; Similar to Yersinia pestis VgrG-like protein y0257 SWALL:AAM83851 (EMBL:AE013625) (700 aa) fasta scores: E(): 7e-108, 52.01% id in 521 aa, and to Vibrio cholerae VgrG protein vca0018 SWALL:Q9KNE7 (EMBL:AE004345) (694 aa) fasta scores: E(): 7.6e-107, 47.05% id in 680 aa.
       0.475
ECA3424
Putative lipoprotein; Similar to Xanthomonas campestris ankyrin-like protein xcc4050 SWALL:Q8P3M1 (EMBL:AE012526) (325 aa) fasta scores: E(): 3.9e-08, 31.22% id in 253 aa, and to Serratia sp. MK1 accessory protein plaS SWALL:Q9X9D9 (EMBL:U37262) (251 aa) fasta scores: E(): 1.5e-07, 26.66% id in 210 aa. Also similar to ECA3425 (83.784% identity in 259 aa overlap).
       0.465
ECA3425
Putative lipoprotein; Similar to Xanthomonas campestris ankyrin-like protein xcc4050 SWALL:Q8P3M1 (EMBL:AE012526) (325 aa) fasta scores: E(): 2.1e-08, 30.68% id in 264 aa, and to Serratia sp. MK1 accessory protein plaS SWALL:Q9X9D9 (EMBL:U37262) (251 aa) fasta scores: E(): 5.5e-07, 25.31% id in 237 aa. Also similar to ECA3424 (83.784% identity in 259 aa overlap).
       0.465
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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