STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3423Hypothetical protein; No significant database matches. (318 aa)    
Predicted Functional Partners:
arcB
Similar to Escherichia coli, and Shigella flexneri aerobic respiration control sensor protein ArcB or b3210 or sf3250 SWALL:ARCB_ECOLI (SWALL:P22763) (778 aa) fasta scores: E(): 8.6e-180, 75.88% id in 788 aa, and to Yersinia pestis aerobic respiration control sensor/response regulatory protein ArcB SWALL:Q8ZB69 (EMBL:AJ414157) (778 aa) fasta scores: E(): 3.6e-190, 80.71% id in 788 aa.
  
 
 0.889
rpfA
Two-component sensor kinase and response regulator; Similar to Pectobacterium carotovorum subsp. carotovorum sensor/regulator protein RpfA SWALL:O08235 (EMBL:U62023) (929 aa) fasta scores: E(): 0, 92.88% id in 928 aa, and to Pectobacterium carotovorum subsp. carotovorum sensory kinase ExpS SWALL:O32556 (EMBL:Y13670) (928 aa) fasta scores: E(): 0, 95.36% id in 928 aa.
  
 
 0.877
ECA3886
Putative membrane protein; Similar to the C-terminal region of many including Pseudomonas aeruginosa hypothetical protein Pa2870 SWALL:Q9HZX6 (EMBL:AE004713) (525 aa) fasta scores: E(): 1.9e-17, 39.39% id in 165 aa, and to Shewanella oneidensis ggdef domain protein so4457 SWALL:AAN57422 (EMBL:AE015878) (485 aa) fasta scores: E(): 2.1e-17, 39.03% id in 187 aa.
  
 0.876
ECA3422
Similar to Vibrio cholerae hypothetical protein Vca0019 SWALL:Q9KNE6 (EMBL:AE004345) (295 aa) fasta scores: E(): 0.32, 20.54% id in 219 aa, and to Agrobacterium tumefaciens hypothetical protein atu4349 or agr_l_1031 SWALL:Q8U7V0 (EMBL:AE009363) (320 aa) fasta scores: E(): 0.34, 21.94% id in 319 aa.
       0.810
ECA3421
Rhs protein; Similar to Photorhabdus luminescens Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 2.3e-61, 28.84% id in 1286 aa, and to Escherichia coli RhsB protein precursor RhsB or b3482 SWALL:RHSB_ECOLI (SWALL:P16917) (1411 aa) fasta scores: E(): 2e-25, 24.98% id in 1401 aa.
  
    0.786
ECA3420
Conserved hypothetical protein; Similar to Pediococcus damnosus hsp60 SWALL:Q8KWK2 (EMBL:AF405397) (184 aa) fasta scores: E(): 4.1, 24.65% id in 146 aa.
       0.718
sucA
2-oxoglutarate dehydrogenase E1 component; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 2-oxoglutarate dehydrogenase E1 component SucA or b0726 or c0803 or z0880 or ecs0751 SWALL:ODO1_ECOLI (SWALL:P07015) (933 aa) fasta scores: E(): 0, 83.42% id in 935 aa.
    
 
 0.706
hrpI
Type III secretion protein; Similar to Erwinia amylovora harpin secretion protein HrpI SWALL:HRPI_ERWAM (SWALL:P35654) (697 aa) fasta scores: E(): 2e-193, 76.35% id in 702 aa, and to Pantoea agglomerans HrcV protein HrcV SWALL:Q937I5 (EMBL:X99768) (719 aa) fasta scores: E(): 2.2e-196, 75.42% id in 704 aa.
  
  
 0.628
hrcJ
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrcJ SWALL:Q93FZ6 (EMBL:AF302656) (255 aa) fasta scores: E(): 2.1e-90, 95.66% id in 254 aa, and to Erwinia chrysanthemi HrcJ SWALL:Q8KUL9 (EMBL:AF448202) (245 aa) fasta scores: E(): 5.5e-67, 75.94% id in 237 aa.
  
  
 0.619
hrcU
Type III secretion protein; Similar to Erwinia amylovora HrcU SWALL:Q46649 (EMBL:L25828) (360 aa) fasta scores: E(): 1e-95, 66.94% id in 360 aa, and to Pantoea agglomerans HrcU protein HrcU SWALL:Q47859 (EMBL:X99768) (360 aa) fasta scores: E(): 5.4e-92, 64.34% id in 359 aa.
  
  
 0.614
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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