Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA3425Putative lipoprotein; Similar to Xanthomonas campestris ankyrin-like protein xcc4050 SWALL:Q8P3M1 (EMBL:AE012526) (325 aa) fasta scores: E(): 2.1e-08, 30.68% id in 264 aa, and to Serratia sp. MK1 accessory protein plaS SWALL:Q9X9D9 (EMBL:U37262) (251 aa) fasta scores: E(): 5.5e-07, 25.31% id in 237 aa. Also similar to ECA3424 (83.784% identity in 259 aa overlap). (259 aa)    
Predicted Functional Partners:
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
 
 0.932
ECA3426
Putative phospholipase; Similar to Serratia liquefaciens extracellular phospholipase A1 precursor PhlA SWALL:PA1_SERLI (SWALL:P18952) (319 aa) fasta scores: E(): 4.2e-06, 30.09% id in 216 aa, and to Xanthomonas campestris phospholipase A1 xcc2722 SWALL:Q8P791 (EMBL:AE012385) (398 aa) fasta scores: E(): 3e-09, 33.82% id in 204 aa.
 
   
 0.806
ECA3427
Conserved hypothetical protein; Similar to Yersinia pestis VgrG-like protein y0257 SWALL:AAM83851 (EMBL:AE013625) (700 aa) fasta scores: E(): 7e-108, 52.01% id in 521 aa, and to Vibrio cholerae VgrG protein vca0018 SWALL:Q9KNE7 (EMBL:AE004345) (694 aa) fasta scores: E(): 7.6e-107, 47.05% id in 680 aa.
     
 0.778
ECA3424
Putative lipoprotein; Similar to Xanthomonas campestris ankyrin-like protein xcc4050 SWALL:Q8P3M1 (EMBL:AE012526) (325 aa) fasta scores: E(): 3.9e-08, 31.22% id in 253 aa, and to Serratia sp. MK1 accessory protein plaS SWALL:Q9X9D9 (EMBL:U37262) (251 aa) fasta scores: E(): 1.5e-07, 26.66% id in 210 aa. Also similar to ECA3425 (83.784% identity in 259 aa overlap).
 
    
0.774
ECA3428
Conserved hypothetical protein; Similar to Vibrio cholerae hcp=28 kDa secreted hydrophilic protein (HcpA or vca0017) and (Hcp or vc1415) SWALL:P72350 (EMBL:S81006) (172 aa) fasta scores: E(): 9.6e-56, 78.48% id in 172 aa, and to Yersinia pestis hypothetical protein ypo3708 ypo3708 or y0036 SWALL:AAM83631 (EMBL:AJ414158) (172 aa) fasta scores: E(): 4.8e-59, 80.81% id in 172 aa. The Yersinia pestis orthologue of this gene is described as a hemolysin co-regulated protein. Also similar to ECA4275 (99.419% identity in 172aa overlap) and ECA2866 (95.349% identity in 172aa overlap).
     
 0.664
ECA3420
Conserved hypothetical protein; Similar to Pediococcus damnosus hsp60 SWALL:Q8KWK2 (EMBL:AF405397) (184 aa) fasta scores: E(): 4.1, 24.65% id in 146 aa.
     
 0.652
ECA3421
Rhs protein; Similar to Photorhabdus luminescens Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 2.3e-61, 28.84% id in 1286 aa, and to Escherichia coli RhsB protein precursor RhsB or b3482 SWALL:RHSB_ECOLI (SWALL:P16917) (1411 aa) fasta scores: E(): 2e-25, 24.98% id in 1401 aa.
  
  
 0.648
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
 0.638
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
 0.621
putA
Bifunctional PutA protein [includes: proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
 0.609
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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