STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3435Similar to Vibrio cholerae sigma-54 dependent transcriptional regulator vca0117 SWALL:Q9KN48 (EMBL:AE004353) (530 aa) fasta scores: E(): 9.9e-52, 40.46% id in 519 aa, and to Escherichia coli hypothetical sigma-54-dependent transcriptional regulator ygev or b2869 SWALL:YGEV_ECOLI (SWALL:Q46802) (592 aa) fasta scores: E(): 1.8e-39, 35.61% id in 438 aa. (517 aa)    
Predicted Functional Partners:
ECA3433
Conserved hypothetical protein; Similar to Photorhabdus luminescens Orf1 SWALL:AAN64193 (EMBL:AY144117) (334 aa) fasta scores: E(): 1e-39, 39.56% id in 321 aa, and to Vibrio cholerae hypothetical protein Vca0119 SWALL:Q9KN46 (EMBL:AE004353) (469 aa) fasta scores: E(): 2.8e-42, 34.05% id in 464 aa.
 
   
 0.838
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.836
ECA3440
Similar to Yersinia pestis hypothetical protein ypo3595 or y0279 SWALL:Q8ZB34 (EMBL:AJ414157) (438 aa) fasta scores: E(): 1.1e-36, 40.92% id in 435 aa, and to Escherichia coli O157:H7 hypothetical protein z0258 or ecs0227 SWALL:Q8X7U8 (EMBL:AE005198) (433 aa) fasta scores: E(): 1.3e-35, 39.2% id in 426 aa.
 
   
 0.834
ECA3443
Similar to Yersinia pestis hypothetical protein ypo3705 or y0039 SWALL:Q8ZAT5 (EMBL:AJ414158) (146 aa) fasta scores: E(): 2.3e-22, 45.71% id in 140 aa, and to Escherichia coli O157:H7 hypothetical protein z0261 or ecs0230 SWALL:Q8X7U0 (EMBL:AE005198) (137 aa) fasta scores: E(): 3.6e-14, 36.76% id in 136 aa.
 
   
 0.818
ECA3434
Putative exported protein; Similar to Yersinia pestis hypothetical protein Ypo3601 SWALL:Q8ZB28 (EMBL:AJ414157) (228 aa) fasta scores: E(): 4.8e-09, 31.88% id in 207 aa, and to Pseudomonas putida conserved hypothetical protein pp4073 SWALL:AAN69663 (EMBL:AE016789) (210 aa) fasta scores: E(): 2.2e-05, 35.23% id in 105 aa.
     
 0.807
ECA3437
Putative membrane protein; Similar to Rhizobium leguminosarum ImpK SWALL:Q93EC3 (EMBL:AF361470) (510 aa) fasta scores: E(): 3.4e-16, 27.58% id in 232 aa, and to Yersinia pestis putative membrane protein ypo3598 or y0276 SWALL:AAM83868 (EMBL:AJ414157) (255 aa) fasta scores: E(): 4e-46, 46.45% id in 254 aa.
     
 0.807
ECA3439
Similar to Yersinia pestis putative lipoprotein ypo3596 or y0278 SWALL:Q8ZB33 (EMBL:AJ414157) (181 aa) fasta scores: E(): 4.7e-32, 52.6% id in 173 aa, and to Escherichia coli O157:H7 z0257 protein z0257 or ecs0226 SWALL:Q8X7V0 (EMBL:AE005198) (174 aa) fasta scores: E(): 2.1e-28, 47.3% id in 167 aa.
 
   
 0.797
ECA3436
Putative chaperone; Similar to Thermus thermophilus ClpB protein ClpB SWALL:CLPB_THETH (SWALL:Q9RA63) (854 aa) fasta scores: E(): 7e-69, 37.97% id in 869 aa, and to Yersinia pestis clp ATPase ClpB2 or ypo3599 or ClpB or y0275 SWALL:Q8ZB30 (EMBL:AJ414157) (867 aa) fasta scores: E(): 6.3e-209, 68.66% id in 868 aa; Belongs to the ClpA/ClpB family.
       0.785
ECA3432
Putative virulence-associated protein; Similar to Rhizobium leguminosarum ImpL SWALL:Q93EC2 (EMBL:AF361470) (1158 aa) fasta scores: E(): 1.3e-19, 25.08% id in 1200 aa, and to Escherichia coli O157:H7 putative macrophage toxin z0250 or ecs0218 SWALL:Q8X7W9 (EMBL:AE005197) (1144 aa) fasta scores: E(): 7.8e-112, 44.66% id in 1153 aa, and to Photorhabdus luminescens Pmt1 SWALL:AAN64194 (EMBL:AY144117) (1181 aa) fasta scores: E(): 1.3e-127, 44.42% id in 1184 aa, and to Legionella pneumophila IcmF protein IcmF SWALL:O54529 (EMBL:Y15044) (973 aa) fasta scores: E(): 7.8e-16, 20.74% id in 969 aa.
 
     0.764
ECA3441
Similar to Vibrio cholerae hypothetical protein Vca0111 SWALL:Q9KN54 (EMBL:AE004353) (338 aa) fasta scores: E(): 1.1e-59, 46.8% id in 329 aa, and to Yersinia pestis hypothetical protein Ypo3594 SWALL:Q8ZB35 (EMBL:AJ414157) (349 aa) fasta scores: E(): 2.5e-47, 54.6% id in 326 aa.
     
 0.760
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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