STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ficSimilar to Escherichia coli cell filamentation protein Fic or b3361 SWALL:FIC_ECOLI (SWALL:P20605) (200 aa) fasta scores: E(): 1e-26, 37.3% id in 193 aa. (198 aa)    
Predicted Functional Partners:
ECA3451
Hypothetical protein; No significant database matches.
       0.800
ECA3453
Putative phage capsid protein (partial); Similar to the C-terminal regions of Bacteriophage P4 glycoprotein 3 siD SWALL:VSID_BPP4 (SWALL:P05461) (244 aa) fasta scores: E(): 0.04, 30.35% id in 56 aa, and to Salmonella typhi putative phage capsid protein t4524 SWALL:AAO71969 (EMBL:AE016849) (286 aa) fasta scores: E(): 0.0029, 43.63% id in 55 aa.
       0.773
ECA3454
Similar to Bacteriophage 186 late control gene B protein B SWALL:VPB_BP186 (SWALL:P08711) (72 aa) fasta scores: E(): 2.6e-10, 58.73% id in 63 aa, and to Salmonella typhi bacteriophage gene regulatory protein sty4826 SWALL:Q8Z107 (EMBL:AL627283) (79 aa) fasta scores: E(): 4.7e-13, 52.43% id in 82 aa. Also similar to ECA0414 (84.146% id. in 55 aa overlap), and to ECA0833 (46.000% id. in 50 aa overlap), and to ECA2599 (43.836% id. in 51 aa overlap).
       0.773
ECA3455
Similar to Salmonella typhi hypothetical protein Sty4632 SWALL:Q8Z1E2 (EMBL:AL627283) (72 aa) fasta scores: E(): 0.00018, 51.11% id in 45 aa, and to Ralstonia solanacearum hypothetical protein rsc0956 or rs04410 SWALL:Q8Y0T7 (EMBL:AL646061) (55 aa) fasta scores: E(): 6.6, 50% id in 24 aa.
       0.503
ECA2348
Conserved hypothetical protein; Similar to Salmonella typhimurium putative ser protein kinase yeag or stm1285 SWALL:Q8ZPW2 (EMBL:AE008755) (644 aa) fasta scores: E(): 0, 94.09% id in 644 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yeag or b1783 or c2188 or z2823 or ecs2492 SWALL:YEAG_ECOLI (SWALL:P77391) (644 aa) fasta scores: E(): 0, 94.09% id in 644 aa.
   
    0.485
uspB
Similar to Yersinia pestis universal stress protein B UspB SWALL:Q8ZA50 (EMBL:AJ414160) (111 aa) fasta scores: E(): 3.4e-43, 84.68% id in 111 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 universal stress protein b UspB SWALL:USPB_ECOLI (SWALL:P37632) (111 aa) fasta scores: E(): 4.2e-40, 81.08% id in 111 aa.
   
    0.459
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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