STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3465Similar to Yersinia pestis hypothetical protein y0964 SWALL:AAM84545 (EMBL:AE013700) (421 aa) fasta scores: E(): 1.4e-127, 71.56% id in 415 aa, and to Salmonella typhimurium hypothetical protein yafa or stm0318 SWALL:YAFA_SALTY (SWALL:P37722) (414 aa) fasta scores: E(): 8.4e-120, 66.18% id in 417 aa; Belongs to the UPF0255 family. (416 aa)    
Predicted Functional Partners:
crl
Curlin genes transcriptional activator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
 
     0.816
ECA4240
Similar to Yersinia pestis putative membrane protein ypo3912 or y0323 SWALL:AAM83914 (EMBL:AJ414159) (135 aa) fasta scores: E(): 3e-29, 63.86% id in 119 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yijd or b3964 or c4927 or z5525 or ecs4895 SWALL:YIJD_ECOLI (SWALL:P27308) (119 aa) fasta scores: E(): 4.3e-29, 65.48% id in 113 aa.
  
     0.772
ECA1344
Similar to Yersinia pestis putative membrane protein ypo2693 SWALL:Q8ZD95 (EMBL:AJ414153) (68 aa) fasta scores: E(): 4.2e-22, 73.52% id in 68 aa, and to Salmonella typhimurium putative periplasmic protein ybfa or stm0708 SWALL:Q8ZQV9 (EMBL:AE008728) (68 aa) fasta scores: E(): 3.2e-20, 72.05% id in 68 aa.
  
     0.767
ECA0018
Conserved hypothetical protein; Similar to Pectobacterium carotovorum subsp. carotovorum YihD SWALL:Q9RB12 (EMBL:AF146615) (89 aa) fasta scores: E(): 6.6e-33, 98.87% id in 89 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 protein YihD SWALL:YIHD_ECOLI (SWALL:P32126) (89 aa) fasta scores: E(): 1.8e-26, 80.89% id in 89 aa.
  
     0.766
ECA3037
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yfbu or stm2335 or sty2565 SWALL:Q8XGJ0 (EMBL:AE008805) (164 aa) fasta scores: E(): 4.1e-58, 87.19% id in 164 aa, and to Yersinia pestis hypothetical protein Ypo2563 SWALL:Q8ZDJ9 (EMBL:AJ414152) (164 aa) fasta scores: E(): 8.8e-58, 82.92% id in 164 aa; Belongs to the UPF0304 family.
  
     0.740
ECA0979
Putative exported protein; Similar to Salmonella typhimurium putative periplasmic protein yggn or stm3107 SWALL:Q8ZM42 (EMBL:AE008842) (239 aa) fasta scores: E(): 1.6e-48, 59.41% id in 239 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yggn or b2958 or c3544 or z4303 or ecs3834 SWALL:YGGN_ECOLI (SWALL:P46143) (239 aa) fasta scores: E(): 1.8e-48, 58.99% id in 239 aa.
  
     0.730
ECA3080
Similar to Yersinia pestis hypothetical protein Ypo2745 SWALL:Q8ZD47 (EMBL:AJ414153) (98 aa) fasta scores: E(): 5.1e-27, 74.48% id in 98 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein yfcz or b2343 or c2888 SWALL:YFCZ_ECOLI (SWALL:P76504) (94 aa) fasta scores: E(): 7.5e-25, 69.14% id in 94 aa.
  
     0.730
ECA3344
Endonuclease/exonuclease/phosphatase family protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yafd yafd or b0209 or c0246 or z0232 or ecs0205 or sf0195 SWALL:YAFD_ECOLI (SWALL:P30865) (266 aa) fasta scores: E(): 2.4e-76, 71.53% id in 260 aa, and to Salmonella typhimurium putative cytoplasmic protein yafd or stm0258 SWALL:Q8ZRM4 (EMBL:AE008706) (259 aa) fasta scores: E(): 1.5e-74, 71.54% id in 253 aa.
  
     0.729
zapC
Conserved hypothetical protein; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
     0.727
ECA2287
Conserved hypothetical protein; Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 hypothetical protein SWALL:AAO69255 (EMBL:AE016839) (83 aa) fasta scores: E(): 3.7e-19, 66.26% id in 83 aa, and to Yersinia pestis hypothetical protein ypo2217 ypo2217 or y2058 SWALL:Q8ZEF6 (EMBL:AJ414151) (83 aa) fasta scores: E(): 5e-19, 71.42% id in 77 aa.
  
     0.725
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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