STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3469Similar to Rhizobium loti probable DNA-binding protein mlr2155 SWALL:Q98J14 (EMBL:AP002999) (276 aa) fasta scores: E(): 2.2e-30, 38.69% id in 261 aa, and to Bradyrhizobium japonicum Bll4672 protein bll4672 SWALL:BAC49937 (EMBL:AP005952) (282 aa) fasta scores: E(): 4.5e-47, 49.61% id in 260 aa. (266 aa)    
Predicted Functional Partners:
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
    
 0.757
ECA3470
Putative methyltransferase; Similar to Shigella flexneri orf, conserved hypothetical protein yafe or sf0196 SWALL:AAN41858 (EMBL:AE015056) (256 aa) fasta scores: E(): 8.2e-58, 64.28% id in 252 aa, and to Salmonella typhi putative methyltransferase yafe or sty0280 SWALL:Q8Z984 (EMBL:AL627266) (256 aa) fasta scores: E(): 4.1e-54, 60.31% id in 252 aa.
 
     0.699
dinB
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
       0.565
ECA2247
Arac-family transcriptional regulator; Similar to Escherichia coli O157:H7 putative AraC-like transcriptional regulator z0442 or ecs0399 SWALL:Q8X683 (EMBL:AE005214) (317 aa) fasta scores: E(): 1.5e-74, 57.64% id in 314 aa, and to Pseudomonas aeruginosa putative transcriptional regulator SWALL:AAN62262 (EMBL:AF440524) (332 aa) fasta scores: E(): 7.5e-68, 55.01% id in 309 aa.
  
    0.449
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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