STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3470Putative methyltransferase; Similar to Shigella flexneri orf, conserved hypothetical protein yafe or sf0196 SWALL:AAN41858 (EMBL:AE015056) (256 aa) fasta scores: E(): 8.2e-58, 64.28% id in 252 aa, and to Salmonella typhi putative methyltransferase yafe or sty0280 SWALL:Q8Z984 (EMBL:AL627266) (256 aa) fasta scores: E(): 4.1e-54, 60.31% id in 252 aa. (256 aa)    
Predicted Functional Partners:
ECA3469
Similar to Rhizobium loti probable DNA-binding protein mlr2155 SWALL:Q98J14 (EMBL:AP002999) (276 aa) fasta scores: E(): 2.2e-30, 38.69% id in 261 aa, and to Bradyrhizobium japonicum Bll4672 protein bll4672 SWALL:BAC49937 (EMBL:AP005952) (282 aa) fasta scores: E(): 4.5e-47, 49.61% id in 260 aa.
 
     0.695
ECA4358
Putative membrane protein; Similar to Escherichia coli hypothetical protein yhhs or b3473 SWALL:YHHS_ECOLI (SWALL:P37621) (419 aa) fasta scores: E(): 3.3e-102, 70.88% id in 395 aa, and to Pseudomonas putida membrane protein, putative pp4492 SWALL:AAN70067 (EMBL:AE016790) (400 aa) fasta scores: E(): 1.4e-70, 52.68% id in 391 aa.
  
     0.521
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
     
 0.487
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
  
 0.464
ECA0108
Putative membrane protein; Similar to Shigella flexneri conserved hypothetical protein YdgC SWALL:AAN43211 (EMBL:AE015184) (111 aa) fasta scores: E(): 9.5e-27, 65.42% id in 107 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YdgC SWALL:YDGC_ECOLI (SWALL:P52110) (111 aa) fasta scores: E(): 9.5e-27, 65.42% id in 107 aa.
  
     0.439
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
   
 
 0.435
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.