STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3479Hypothetical protein; Weakly similar to Ralstonia solanacearum hypothetical protein rsp0177 or rs04689 SWALL:Q8XTD6 (EMBL:AL646077) (740 aa) fasta scores: E(): 0.00056, 26.34% id in 410 aa. (571 aa)    
Predicted Functional Partners:
ECA3480
Conserved hypothetical protein; Similar to Pseudomonas sp. CA10 hypothetical 18.9 kDa protein SWALL:Q9AQM6 (EMBL:AB047548) (170 aa) fasta scores: E(): 3.2, 25.17% id in 147 aa, and to Pseudomonas resinovorans hypothetical protein SWALL:BAC41541 (EMBL:AB088420) (170 aa) fasta scores: E(): 3.2, 25.17% id in 147 aa.
       0.773
ECA0111
Conserved hypothetical protein; Similar to Escherichia coli O6 putative GumP homolog c1691 SWALL:AAN80158 (EMBL:AE016760) (268 aa) fasta scores: E(): 3.6e-70, 63.43% id in 268 aa, and to Yersinia pestis hypothetical y2332 SWALL:AAM85891 (EMBL:AE013835) (283 aa) fasta scores: E(): 2.2e-69, 62.68% id in 268 aa, and to Xanthomonas axonopodis GumP protein SWALL:Q8PJG2 (EMBL:AE011897) (282 aa) fasta scores: E(): 8.9e-25, 35.71% id in 266 aa.
  
     0.696
ECA0115
Putative fatty acid desaturase; Similar to Escherichia coli O6 hypothetical protein c1695 SWALL:AAN80162 (EMBL:AE016760) (363 aa) fasta scores: E(): 7.8e-66, 45.87% id in 364 aa, and to Synechocystis sp. linoleoyl-coA desaturase des6 or sll0262 SWALL:LLCD_SYNY3 (SWALL:Q08871) (359 aa) fasta scores: E(): 1.5e-18, 28.49% id in 365 aa.
  
     0.668
ECA0112
Conserved hypothetical protein; Similar to Yersinia pestis putative coenzyme synthetase ypo1981 SWALL:Q8ZF14 (EMBL:AJ414150) (428 aa) fasta scores: E(): 3.7e-117, 67.37% id in 423 aa, and to Escherichia coli O6 hypothetical protein c1692 SWALL:AAN80159 (EMBL:AE016760) (428 aa) fasta scores: E(): 1.3e-111, 65.48% id in 423 aa.
  
     0.665
ECA3478
Similar to Vibrio cholerae hypothetical protein Vca0105 SWALL:Q9KN60 (EMBL:AE004353) (94 aa) fasta scores: E(): 2.3e-15, 55.31% id in 94 aa, and to Escherichia coli O6 hypothetical protein c1887 SWALL:AAN80347 (EMBL:AE016760) (94 aa) fasta scores: E(): 1.7e-13, 53.19% id in 94 aa.
     
 0.656
ECA0674
Putative phage-related protein; Similar to Bacteriophage phiE125 gp69 69 SWALL:Q8W6N1 (EMBL:AF447491) (85 aa) fasta scores: E(): 0.0057, 36.84% id in 76 aa, and to Yersinia pestis hypothetical protein Ypo0884 SWALL:Q8ZHK7 (EMBL:AJ414145) (86 aa) fasta scores: E(): 1.9e-10, 48.31% id in 89 aa.
  
     0.639
togB
Similar to Erwinia chrysanthemi periplasmic binding protein precursor TogB SWALL:Q93KB7 (EMBL:AJ305144) (430 aa) fasta scores: E(): 3.3e-143, 84.84% id in 429 aa, and to Yersinia pestis putative sugar-binding protein ypo1719 or TogB or y1881 SWALL:Q8ZFI4 (EMBL:AJ414150) (430 aa) fasta scores: E(): 1.4e-137, 80.69% id in 430 aa. Also similar to ECA3551 (56.398% id) and to ECA2210 (50.117% id).
  
     0.631
ECA0116
Putative fatty acid desaturase; Similar to Escherichia coli O6 hypothetical protein c1695 SWALL:AAN80162 (EMBL:AE016760) (363 aa) fasta scores: E(): 4.1e-77, 54.33% id in 346 aa, and to Synechocystis sp. linoleoyl-coA desaturase des6 or sll0262 SWALL:LLCD_SYNY3 (SWALL:Q08871) (359 aa) fasta scores: E(): 1.3e-20, 28.57% id in 364 aa.
  
     0.620
ECA0113
Putative membrane protein; Similar to Escherichia coli O6 hypothetical protein c1693 SWALL:AAN80160 (EMBL:AE016760) (204 aa) fasta scores: E(): 5.5e-40, 58.69% id in 184 aa, and to Ralstonia solanacearum probable transmembrane protein rsp0404 SWALL:Q8XSR3 (EMBL:AL646078) (220 aa) fasta scores: E(): 9.5e-09, 31.25% id in 208 aa.
  
     0.602
ogl
Oligogalacturonate lyase; Involved in degradation of pectin, which causes soft-rod disease in plants.
  
     0.563
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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