STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3480Conserved hypothetical protein; Similar to Pseudomonas sp. CA10 hypothetical 18.9 kDa protein SWALL:Q9AQM6 (EMBL:AB047548) (170 aa) fasta scores: E(): 3.2, 25.17% id in 147 aa, and to Pseudomonas resinovorans hypothetical protein SWALL:BAC41541 (EMBL:AB088420) (170 aa) fasta scores: E(): 3.2, 25.17% id in 147 aa. (173 aa)    
Predicted Functional Partners:
ECA3479
Hypothetical protein; Weakly similar to Ralstonia solanacearum hypothetical protein rsp0177 or rs04689 SWALL:Q8XTD6 (EMBL:AL646077) (740 aa) fasta scores: E(): 0.00056, 26.34% id in 410 aa.
       0.773
ECA3478
Similar to Vibrio cholerae hypothetical protein Vca0105 SWALL:Q9KN60 (EMBL:AE004353) (94 aa) fasta scores: E(): 2.3e-15, 55.31% id in 94 aa, and to Escherichia coli O6 hypothetical protein c1887 SWALL:AAN80347 (EMBL:AE016760) (94 aa) fasta scores: E(): 1.7e-13, 53.19% id in 94 aa.
       0.648
ECA3482
Similar to Ralstonia solanacearum hypothetical protein rsc1499 or rs03806 SWALL:Q8XZA5 (EMBL:AL646064) (233 aa) fasta scores: E(): 6.9, 24.44% id in 180 aa.
       0.521
ECA3481
Putative membrane protein; No significant database matches.
      
0.506
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.