STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3489Similar to Salmonella typhimurium putative amidohydrolase yafv or stm0308 SWALL:Q8ZRJ8 (EMBL:AE008709) (255 aa) fasta scores: E(): 3.3e-78, 72.94% id in 255 aa, and to Escherichia coli O157:H7 putative ec 3.5. amidase-type enzyme yafv or z0276 or ecs0246 SWALL:Q8X7R4 (EMBL:AE005200) (256 aa) fasta scores: E(): 7.5e-75, 70.58% id in 255 aa. (255 aa)    
Predicted Functional Partners:
gdhA
Similar to Escherichia coli NADP-specific glutamate dehydrogenase GdhA or b1761 SWALL:DHE4_ECOLI (SWALL:P00370) (447 aa) fasta scores: E(): 7.7e-145, 85.01% id in 447 aa; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.961
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
    
 0.961
ECA3488
Similar to Escherichia coli O157:H7 putative aminotransferase ybdl or z0743 or ecs0639 SWALL:Q8XBU5 (EMBL:AE005240) (386 aa) fasta scores: E(): 2e-124, 79.79% id in 381 aa, and to Salmonella typhi putative aminotransferase sty0647 SWALL:Q8Z8K5 (EMBL:AL627267) (386 aa) fasta scores: E(): 2e-124, 79% id in 381 aa.
 
 
 0.958
mqo
Similar to Escherichia coli malate:quinone oxidoreductase Mqo or b2210 SWALL:MQO_ECOLI (SWALL:P33940) (548 aa) fasta scores: E(): 2.3e-143, 69.73% id in 522 aa, and to Pseudomonas aeruginosa probable malate:quinone oxidoreductase 1 Mqo1 or MqoA or pa3452 SWALL:MQO1_PSEAE (SWALL:Q9HYF4) (523 aa) fasta scores: E(): 5e-145, 69.06% id in 527 aa.
  
  
  0.950
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate.
  
 0.949
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
   
 
 0.949
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
    
 0.949
aatA
Similar to Rhizobium meliloti aspartate aminotransferase A AatA or r02325 or smc01578 SWALL:AATA_RHIME (SWALL:Q02635) (400 aa) fasta scores: E(): 5.9e-80, 50.62% id in 399 aa, and to Agrobacterium tumefaciens aspartate aminotransferase A AatA or atu4278 or agr_l_1171 SWALL:Q8U821 (EMBL:AE009356) (412 aa) fasta scores: E(): 7.9e-115, 72.04% id in 397 aa.
  
 
 0.949
icd
Similar to Escherichia coli isocitrate dehydrogenase [NADP] Icd or IcdA or IcdE or b1136 SWALL:IDH_ECOLI (SWALL:P08200) (416 aa) fasta scores: E(): 1.7e-143, 88.01% id in 417 aa.
    
  0.947
aspC
Similar to Escherichia coli aspartate aminotransferase AspC or b0928 SWALL:AAT_ECOLI (SWALL:P00509) (396 aa) fasta scores: E(): 1.2e-137, 84.59% id in 396 aa.
    
  0.946
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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