STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3493Similar to Yersinia pestis putative amino acid ABC transporter, permease protein ypo3255 or y0934 SWALL:Q8ZBX9 (EMBL:AJ414156) (217 aa) fasta scores: E(): 2.3e-76, 88.47% id in 217 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu1390 or agr_c_2569 SWALL:Q8UFK7 (EMBL:AE009100) (219 aa) fasta scores: E(): 2.6e-49, 59.9% id in 217 aa. (217 aa)    
Predicted Functional Partners:
ECA3492
Putative amino acid ABC transporter, ATP-binding protein; Similar to Bacillus stearothermophilus glutamine transport ATP-binding protein GlnQ SWALL:GLNQ_BACST (SWALL:P27675) (242 aa) fasta scores: E(): 3.8e-43, 52.72% id in 239 aa, and to Yersinia pestis putative amino acid ABC transporter, ATP-binding protein ypo3254 or glnq or y0935 SWALL:Q8ZBY0 (EMBL:AJ414156) (248 aa) fasta scores: E(): 5.2e-78, 89.79% id in 245 aa.
 0.996
ECA3495
Similar to Yersinia pestis putative amino acid ABC transporter, periplasmic protein ypo3257 or y0932 SWALL:Q8ZBX7 (EMBL:AJ414156) (262 aa) fasta scores: E(): 3.7e-73, 76.8% id in 263 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu1388 or agr_c_2566 SWALL:Q8UFK9 (EMBL:AE009100) (261 aa) fasta scores: E(): 1.1e-56, 60.85% id in 258 aa; Belongs to the bacterial solute-binding protein 3 family.
  0.996
ECA3494
Similar to Yersinia pestis putative amino acid ABC transporter, permease protein ypo3256 or y0933 SWALL:AAM84515 (EMBL:AJ414156) (222 aa) fasta scores: E(): 1.1e-67, 79.27% id in 222 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu1389 or agr_c_2567 SWALL:Q8UFK8 (EMBL:AE009100) (223 aa) fasta scores: E(): 3.1e-43, 57.27% id in 213 aa.
 
  
 
0.983
artJ
Similar to Escherichia coli arginine-binding periplasmic protein 2 precursor ArtJ or b0860 SWALL:ARTJ_ECOLI (SWALL:P30860) (243 aa) fasta scores: E(): 1.1e-71, 78.6% id in 243 aa; Belongs to the bacterial solute-binding protein 3 family.
   0.863
glnH
Glutamine-binding periplasmic protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glutamine-binding periplasmic protein precursor GlnH or b0811 or c0896 or z1033 or ecs0889 SWALL:GLNH_ECOLI (SWALL:P10344) (248 aa) fasta scores: E(): 3.8e-79, 87.09% id in 248 aa; Belongs to the bacterial solute-binding protein 3 family.
   0.796
artI
Similar to Escherichia coli arginine-binding periplasmic protein 1 precursor ArtI or b0863 SWALL:ARTI_ECOLI (SWALL:P30859) (243 aa) fasta scores: E(): 4e-67, 72.42% id in 243 aa; Belongs to the bacterial solute-binding protein 3 family.
   0.780
ECA3539
Similar to Methanosarcina mazei glutamine transporter, ATP-binding protein GlnQ or mm1941 SWALL:Q8PVM2 (EMBL:AE013431) (240 aa) fasta scores: E(): 2e-55, 67.5% id in 240 aa, and to Oceanobacillus iheyensis glutamine ABC transporter ATP-binding protein ob1006 SWALL:Q8CUV1 (EMBL:AP004596) (240 aa) fasta scores: E(): 8.9e-55, 64.16% id in 240 aa.
 
 0.775
ECA0854
ABC transporter, ATP-binding protein; Similar to Rhizobium sp. TAL1145 mimosine transporter ATP-binding protein MidC SWALL:Q9EYT0 (EMBL:AF312768) (265 aa) fasta scores: E(): 2.7e-49, 57.55% id in 245 aa, and to Corynebacterium glutamicum ABC-type transporter, ATPase component cgl1330 SWALL:Q8NQU4 (EMBL:AP005278) (250 aa) fasta scores: E(): 1.9e-50, 59.57% id in 235 aa.
 
 0.772
ECA2970
ABC-transporter ATP-binding protein; Similar to Corynebacterium efficiens putative amino acid ABC transporter ATP-binding protein ce1443 SWALL:BAC18253 (EMBL:AP005218) (254 aa) fasta scores: E(): 1.1e-43, 57.32% id in 239 aa, and to Streptomyces coelicolor ATP-binding protein atrc or sco5258 or 2sc7g11.20C SWALL:Q9F3K7 (EMBL:AL939123) (253 aa) fasta scores: E(): 1.6e-43, 55.02% id in 249 aa.
 
 0.769
ECA4478
Amino acid ABC transporter, ATP-binding protein; Similar to Escherichia coli, and Escherichia coli O157:H7 glutamate/aspartate transport ATP-binding protein GltL or b0652 or z0802 or ecs0691 SWALL:GLTL_ECOLI (SWALL:P41076) (241 aa) fasta scores: E(): 5.3e-49, 61.66% id in 240 aa.
 
 0.760
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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