STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3497Similar to Xanthomonas axonopodis gamma-glutamyltranspeptidase Ggt or xac0305 SWALL:Q8PQL8 (EMBL:AE011655) (526 aa) fasta scores: E(): 1.1e-98, 53.01% id in 530 aa, and to Vibrio cholerae gamma-glutamyltranspeptidase, putative vca0558 SWALL:Q9KM31 (EMBL:AE004386) (522 aa) fasta scores: E(): 2.1e-82, 48.24% id in 514 aa. (528 aa)    
Predicted Functional Partners:
ECA3499
Probable amidase; Similar to Yersinia pestis probable amidase ypo3261 or y0928 SWALL:Q8ZBX3 (EMBL:AJ414156) (465 aa) fasta scores: E(): 5.1e-122, 70.11% id in 455 aa, and to Pseudomonas sp. biuret hydrolase atzE SWALL:Q936X3 (EMBL:U66917) (457 aa) fasta scores: E(): 2e-87, 53.09% id in 452 aa.
 
 
  0.974
ECA3500
Similar to Yersinia pestis hypothetical protein ypo3262 or y0927 SWALL:Q8ZBX2 (EMBL:AJ414156) (155 aa) fasta scores: E(): 2e-36, 73.17% id in 123 aa, and to Bradyrhizobium japonicum Blr1042 protein blr1042 SWALL:BAC46307 (EMBL:AP005938) (130 aa) fasta scores: E(): 3.8e-26, 57.6% id in 125 aa.
 
   
 0.760
ECA3498
Similar to Yersinia pestis hypothetical protein Ypo3260 SWALL:Q8ZBX4 (EMBL:AJ414156) (67 aa) fasta scores: E(): 3.1e-08, 55.73% id in 61 aa, and to Anabaena sp. hypothetical protein Asr1017 SWALL:Q8YY35 (EMBL:AP003584) (62 aa) fasta scores: E(): 0.018, 37.7% id in 61 aa.
       0.705
ECA3496
Similar to Yersinia pestis putative RpiR-family transcriptional regulatory protein ypo3259 or y0931 SWALL:Q8ZBX5 (EMBL:AJ414156) (281 aa) fasta scores: E(): 1.9e-75, 73.28% id in 277 aa, and to Rhizobium meliloti hypothetical protein r02078 r02078 or smc04363 SWALL:Q92NU4 (EMBL:AL591789) (280 aa) fasta scores: E(): 3e-21, 33.33% id in 273 aa.
 
     0.631
amaB
Similar to Bacillus stearothermophilus N-carbamoyl-L-amino acid hydrolase AmaB SWALL:AMB1_BACST (SWALL:P37113) (409 aa) fasta scores: E(): 1.6e-54, 40.69% id in 403 aa, and to Yersinia pestis putative N-carbamyl-L-amino acid amidohydrolase y0939 SWALL:AAM84520 (EMBL:AE013696) (431 aa) fasta scores: E(): 3.3e-109, 66.34% id in 419 aa.
 
   
 0.508
ECA3764
Similar to Pseudomonas aeruginosa probable sodium:solute symporter pa0287 SWALL:Q9I6K3 (EMBL:AE004466) (461 aa) fasta scores: E(): 4.1e-21, 23.02% id in 456 aa, and to Vibrio vulnificus na+/proline symporter vv20592 SWALL:AAO07538 (EMBL:AE016810) (492 aa) fasta scores: E(): 8.5e-19, 25.05% id in 455 aa; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.453
pucG
Similar to Bacillus subtilis purine catabolism protein PucG SWALL:PUCG_BACSU (SWALL:O32148) (416 aa) fasta scores: E(): 1.9e-78, 52.73% id in 402 aa, and to Xanthomonas campestris serine-pyruvate aminotransferase xcc0283 SWALL:Q8PDQ2 (EMBL:AE012124) (418 aa) fasta scores: E(): 2.2e-93, 59.7% id in 407 aa.
 
     0.445
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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