STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3498Similar to Yersinia pestis hypothetical protein Ypo3260 SWALL:Q8ZBX4 (EMBL:AJ414156) (67 aa) fasta scores: E(): 3.1e-08, 55.73% id in 61 aa, and to Anabaena sp. hypothetical protein Asr1017 SWALL:Q8YY35 (EMBL:AP003584) (62 aa) fasta scores: E(): 0.018, 37.7% id in 61 aa. (63 aa)    
Predicted Functional Partners:
ECA3499
Probable amidase; Similar to Yersinia pestis probable amidase ypo3261 or y0928 SWALL:Q8ZBX3 (EMBL:AJ414156) (465 aa) fasta scores: E(): 5.1e-122, 70.11% id in 455 aa, and to Pseudomonas sp. biuret hydrolase atzE SWALL:Q936X3 (EMBL:U66917) (457 aa) fasta scores: E(): 2e-87, 53.09% id in 452 aa.
       0.791
ECA3497
Similar to Xanthomonas axonopodis gamma-glutamyltranspeptidase Ggt or xac0305 SWALL:Q8PQL8 (EMBL:AE011655) (526 aa) fasta scores: E(): 1.1e-98, 53.01% id in 530 aa, and to Vibrio cholerae gamma-glutamyltranspeptidase, putative vca0558 SWALL:Q9KM31 (EMBL:AE004386) (522 aa) fasta scores: E(): 2.1e-82, 48.24% id in 514 aa.
       0.705
ECA3500
Similar to Yersinia pestis hypothetical protein ypo3262 or y0927 SWALL:Q8ZBX2 (EMBL:AJ414156) (155 aa) fasta scores: E(): 2e-36, 73.17% id in 123 aa, and to Bradyrhizobium japonicum Blr1042 protein blr1042 SWALL:BAC46307 (EMBL:AP005938) (130 aa) fasta scores: E(): 3.8e-26, 57.6% id in 125 aa.
       0.662
ECA3496
Similar to Yersinia pestis putative RpiR-family transcriptional regulatory protein ypo3259 or y0931 SWALL:Q8ZBX5 (EMBL:AJ414156) (281 aa) fasta scores: E(): 1.9e-75, 73.28% id in 277 aa, and to Rhizobium meliloti hypothetical protein r02078 r02078 or smc04363 SWALL:Q92NU4 (EMBL:AL591789) (280 aa) fasta scores: E(): 3e-21, 33.33% id in 273 aa.
       0.480
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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