Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
proWSimilar to Escherichia coli glycine betaine/L-proline transport system permease protein ProW or b2678 SWALL:PROW_ECOLI (SWALL:P14176) (354 aa) fasta scores: E(): 1.7e-94, 79.61% id in 363 aa. (393 aa)    
Predicted Functional Partners:
proV
Similar to Escherichia coli glycine betaine/L-proline transport ATP-binding protein ProV or b2677 SWALL:PROV_ECOLI (SWALL:P14175) (400 aa) fasta scores: E(): 2e-112, 80.95% id in 399 aa.
 
 0.999
proX
Similar to Escherichia coli, and Escherichia coli O157:H7 glycine betaine-binding periplasmic protein precursor ProX or ProU or b2679 or z3981 or ecs3542 SWALL:PROX_ECOLI (SWALL:P14177) (330 aa) fasta scores: E(): 2.6e-98, 75.74% id in 334 aa.
 
 0.999
afuC
Ferric ABC transporter ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
     
 0.557
malF
Similar to Escherichia coli maltose transport system permease protein MalF or b4033 SWALL:MALF_ECOLI (SWALL:P02916) (514 aa) fasta scores: E(): 5.9e-36, 39.71% id in 277 aa, and to Yersinia pestis putative maltodextrin transport permease ypo0855 or MalF or y3240 SWALL:Q8ZHN5 (EMBL:AJ414145) (435 aa) fasta scores: E(): 6.8e-138, 81.86% id in 419 aa.
     
 0.547
ECA0405
Putative permease; Similar to Salmonella typhimurium putative permease YjgP SWALL:Q8ZK27 (EMBL:AE008910) (366 aa) fasta scores: E(): 1.1e-107, 73.33% id in 360 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YjgP SWALL:YJGP_ECOLI (SWALL:P39340) (366 aa) fasta scores: E(): 1.3e-106, 73.46% id in 358 aa. YjgP belongs to a family of predicted permeases but there is no experimental evidence of this.
     
  0.540
ECA0406
Putative permease; Similar to Escherichia coli, and Escherichia coli O6 hypothetical protein YjgQ SWALL:YJGQ_ECOLI (SWALL:P39341) (360 aa) fasta scores: E(): 2.6e-108, 77.24% id in 356 aa, and to Salmonella typhimurium putative permease YjgQ SWALL:Q8ZK26 (EMBL:AE008910) (360 aa) fasta scores: E(): 2.6e-109, 78.37% id in 356 aa.YjgQ belongs to a family of predicted permeases but there is no experimental evidence of this.
     
  0.540
ECA0751
Probable sugar ABC transporter, ATP-binding protein; Similar to Escherichia coli sn-glycerol-3-phosphate transport ATP-binding protein UgpC or b3450 SWALL:UGPC_ECOLI (SWALL:P10907) (356 aa) fasta scores: E(): 7.9e-56, 47.05% id in 357 aa, and to Salmonella typhimurium maltose/maltodextrin transport ATP-binding protein MalK or stm4230 SWALL:MALK_SALTY (SWALL:P19566) (369 aa) fasta scores: E(): 6.8e-54, 47.58% id in 372 aa; Belongs to the ABC transporter superfamily.
     
  0.540
ECA0851
Putative sugar ABC transporter ATP-binding protein; Similar to Agrobacterium radiobacter lactose transport ATP-binding protein LacK SWALL:LACK_AGRRD (SWALL:Q01937) (363 aa) fasta scores: E(): 5.5e-66, 56.16% id in 365 aa, and to Yersinia pestis putative transport ATP-binding protein y3242 SWALL:AAM86792 (EMBL:AE013925) (368 aa) fasta scores: E(): 1.1e-77, 60.94% id in 361 aa; Belongs to the ABC transporter superfamily.
     
  0.540
togA
ABC transporter, ATP-binding component; Similar to Erwinia chrysanthemi ABC ATPase TogA SWALL:Q93KB8 (EMBL:AJ305144) (375 aa) fasta scores: E(): 8e-119, 85.6% id in 375 aa.
     
  0.540
malK
Similar to Escherichia coli, and Escherichia coli O157:H7 maltose/maltodextrin transport ATP-binding protein MalK or b4035 or z5633 or ecs5018 SWALL:MALK_ECOLI (SWALL:P02914) (371 aa) fasta scores: E(): 1.1e-65, 53.48% id in 359 aa; Belongs to the ABC transporter superfamily.
     
  0.540
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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