STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
proXSimilar to Escherichia coli, and Escherichia coli O157:H7 glycine betaine-binding periplasmic protein precursor ProX or ProU or b2679 or z3981 or ecs3542 SWALL:PROX_ECOLI (SWALL:P14177) (330 aa) fasta scores: E(): 2.6e-98, 75.74% id in 334 aa. (334 aa)    
Predicted Functional Partners:
proV
Similar to Escherichia coli glycine betaine/L-proline transport ATP-binding protein ProV or b2677 SWALL:PROV_ECOLI (SWALL:P14175) (400 aa) fasta scores: E(): 2e-112, 80.95% id in 399 aa.
 
 0.998
proW
Similar to Escherichia coli glycine betaine/L-proline transport system permease protein ProW or b2678 SWALL:PROW_ECOLI (SWALL:P14176) (354 aa) fasta scores: E(): 1.7e-94, 79.61% id in 363 aa.
 
 0.998
mtlR
Mannitol operon repressor; Similar to Escherichia coli, and Escherichia coli O6 mannitol operon repressor MtlR or b3601 or c4418 SWALL:MTLR_ECOLI (SWALL:P36563) (195 aa) fasta scores: E(): 2.6e-47, 74.15% id in 178 aa.
  
     0.599
ECA0296
Similar to Yersinia pestis putative membrane protein ypo3574 SWALL:Q8ZB51 (EMBL:AJ414157) (260 aa) fasta scores: E(): 1.8e-88, 88.84% id in 260 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YrbE SWALL:AAN44700 (EMBL:U18997) (260 aa) fasta scores: E(): 2.7e-84, 85.38% id in 260 aa.
     
 0.478
aapQ
Similar to Rhizobium leguminosarum general L-amino acid transport system permease protein AapQ SWALL:AAPQ_RHILV (SWALL:Q52813) (400 aa) fasta scores: E(): 9e-62, 48.04% id in 383 aa, and to Escherichia coli hypothetical amino-acid ABC transporter permease protein yhdx or b3269 SWALL:YHDX_ECOLI (SWALL:P45767) (362 aa) fasta scores: E(): 2.5e-106, 75.77% id in 355 aa.
  
  
  0.470
ECA0090
Similar to Yersinia pestis hypothetical protein ypo4065 SWALL:AAM87627 (EMBL:AJ414160) (118 aa) fasta scores: E(): 6.1e-24, 67.52% id in 117 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YibL SWALL:YIBL_ECOLI (SWALL:P36564) (120 aa) fasta scores: E(): 2.8e-21, 63.63% id in 121 aa.
  
     0.467
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
    0.446
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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