Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA3509Similar to Yersinia pestis putative amino acid transporter ypo3264 or y0925 SWALL:Q8ZBX0 (EMBL:AJ414156) (257 aa) fasta scores: E(): 1.6e-68, 75.86% id in 232 aa, and to Escherichia coli O157:H7 orf, hypothetical protein z3983 or ecs3544 SWALL:Q8X908 (EMBL:AE005497) (245 aa) fasta scores: E(): 8.5e-63, 71.3% id in 230 aa. (243 aa)    
Predicted Functional Partners:
ECA3510
Putative membrane protein; Similar to Erwinia chrysanthemi YgaH protein YgaH SWALL:Q93KB3 (EMBL:AJ410307) (113 aa) fasta scores: E(): 5.6e-31, 72.97% id in 111 aa, and to Yersinia pestis putative membrane protein ypo3265 or y0924 SWALL:Q8ZBW9 (EMBL:AJ414156) (113 aa) fasta scores: E(): 7.9e-28, 65.13% id in 109 aa.
  
  
 0.892
ECA3835
Putative membrane protein; Similar to Pseudomonas putida conserved hypothetical protein pp2384 SWALL:AAN67997 (EMBL:AE016783) (104 aa) fasta scores: E(): 8.6e-14, 40.77% id in 103 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2038 SWALL:Q9I277 (EMBL:AE004630) (104 aa) fasta scores: E(): 1.9e-13, 42.85% id in 98 aa.
  
  
 0.511
ECA3508
Putative transport protein; Similar to Yersinia pestis probable sugar transporter ypo3263 or y0926 SWALL:AAM84508 (EMBL:AJ414156) (399 aa) fasta scores: E(): 1.2e-102, 78.21% id in 381 aa, and to Salmonella typhi putative transmembrane transport protein sty2938 SWALL:Q8Z4E1 (EMBL:AL627276) (394 aa) fasta scores: E(): 1.5e-100, 74.11% id in 394 aa.
       0.461
emrR
Negative regulator of multidrug resistance; Similar to Erwinia chrysanthemi EmrR protein EmrR SWALL:Q93KB2 (EMBL:AJ410307) (170 aa) fasta scores: E(): 2.2e-50, 77.51% id in 169 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 transcriptional repressor MprA or EmrR or b2684 or c3237 or z3985 or ecs3546 SWALL:MPRA_ECOLI (SWALL:P24201) (176 aa) fasta scores: E(): 1.7e-45, 71.34% id in 171 aa.
       0.458
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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