STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3510Putative membrane protein; Similar to Erwinia chrysanthemi YgaH protein YgaH SWALL:Q93KB3 (EMBL:AJ410307) (113 aa) fasta scores: E(): 5.6e-31, 72.97% id in 111 aa, and to Yersinia pestis putative membrane protein ypo3265 or y0924 SWALL:Q8ZBW9 (EMBL:AJ414156) (113 aa) fasta scores: E(): 7.9e-28, 65.13% id in 109 aa. (113 aa)    
Predicted Functional Partners:
ECA3509
Similar to Yersinia pestis putative amino acid transporter ypo3264 or y0925 SWALL:Q8ZBX0 (EMBL:AJ414156) (257 aa) fasta scores: E(): 1.6e-68, 75.86% id in 232 aa, and to Escherichia coli O157:H7 orf, hypothetical protein z3983 or ecs3544 SWALL:Q8X908 (EMBL:AE005497) (245 aa) fasta scores: E(): 8.5e-63, 71.3% id in 230 aa.
  
  
 0.870
ECA3508
Putative transport protein; Similar to Yersinia pestis probable sugar transporter ypo3263 or y0926 SWALL:AAM84508 (EMBL:AJ414156) (399 aa) fasta scores: E(): 1.2e-102, 78.21% id in 381 aa, and to Salmonella typhi putative transmembrane transport protein sty2938 SWALL:Q8Z4E1 (EMBL:AL627276) (394 aa) fasta scores: E(): 1.5e-100, 74.11% id in 394 aa.
       0.461
emrR
Negative regulator of multidrug resistance; Similar to Erwinia chrysanthemi EmrR protein EmrR SWALL:Q93KB2 (EMBL:AJ410307) (170 aa) fasta scores: E(): 2.2e-50, 77.51% id in 169 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 transcriptional repressor MprA or EmrR or b2684 or c3237 or z3985 or ecs3546 SWALL:MPRA_ECOLI (SWALL:P24201) (176 aa) fasta scores: E(): 1.7e-45, 71.34% id in 171 aa.
     
 0.461
ECA3836
Putative membrane protein; Similar to Pseudomonas putida branched-chain amino acid transport protein AzlC or pp2385 SWALL:AAN67998 (EMBL:AE016783) (230 aa) fasta scores: E(): 3e-36, 47.36% id in 209 aa, and to Vibrio cholerae AzlC family protein vca1002 SWALL:Q9KKU8 (EMBL:AE004427) (239 aa) fasta scores: E(): 1.2e-34, 44.79% id in 221 aa.
  
  
 0.450
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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