Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
metQSimilar to Escherichia coli D-methionine-binding lipoprotein MetQ precursor MetQ or b0197 SWALL:METQ_ECOLI (SWALL:P28635) (271 aa) fasta scores: E(): 3.6e-88, 87.82% id in 271 aa; Belongs to the nlpA lipoprotein family. (271 aa)    
Predicted Functional Partners:
metN
D-methionine transport ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.999
metI
Similar to Escherichia coli D-methionine transport system permease protein MetI or b0198 SWALL:METI_ECOLI (SWALL:P31547) (217 aa) fasta scores: E(): 1.6e-67, 90.32% id in 217 aa.
 0.999
ECA2064
ABC transporter permease protein; Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 ABC transporter integral membrane protein sfbC SWALL:AAO69940 (EMBL:AE016842) (219 aa) fasta scores: E(): 5.5e-61, 81.65% id in 218 aa, and to Oceanobacillus iheyensis ABC transporter permease ob2099 SWALL:Q8EPK2 (EMBL:AP004600) (221 aa) fasta scores: E(): 1.1e-40, 57.4% id in 216 aa.
 0.991
metN1
ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.987
metN2
ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.987
ECA2687
ABC transporter integral membrane protein; Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 ABC transporter integral membrane protein sfbc or t2348 SWALL:AAO69940 (EMBL:AE016842) (219 aa) fasta scores: E(): 2.6e-61, 81.65% id in 218 aa, and to Salmonella enteritidis integral membrane protein sfbC SWALL:Q9S4Y9 (EMBL:AF102556) (202 aa) fasta scores: E(): 1.6e-57, 83.08% id in 201 aa.
 0.976
metF
Similar to Erwinia carotovora 5,10-methylenetetrahydrofolate reductase MetF SWALL:METF_ERWCA (SWALL:P71319) (298 aa) fasta scores: E(): 4.2e-114, 97.65% id in 298 aa, and to Escherichia coli, and Shigella flexneri 5,10-methylenetetrahydrofolate reductase MetF or b3941 or sf4019 SWALL:METF_ECOLI (SWALL:P00394) (296 aa) fasta scores: E(): 2.1e-101, 86.05% id in 294 aa.
  
  
 0.838
metE
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
  
  
 0.772
metL
Similar to Escherichia coli bifunctional aspartokinase/homoserine dehydrogenase II MetL or MetM or b3940 SWALL:AK2H_ECOLI (SWALL:P00562) (809 aa) fasta scores: E(): 0, 83.12% id in 800 aa; In the C-terminal section; belongs to the homoserine dehydrogenase family.
   
  
 0.657
ECA2689
Similar to Salmonella typhi lipoprotein sfba or sty0558 SWALL:Q8Z8R6 (EMBL:AL627267) (276 aa) fasta scores: E(): 2.7e-73, 74.36% id in 277 aa, and to Oceanobacillus iheyensis lipoprotein ob2098 SWALL:BAC14054 (EMBL:AP004600) (274 aa) fasta scores: E(): 9.9e-41, 46.93% id in 277 aa.
  
  
 
0.647
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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