STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3599Conserved hypothetical protein; Similar to Escherichia coli, and Escherichia coli O6 hypothetical protein ytfk or b4217 or c5315 SWALL:YTFK_ECOLI (SWALL:P39318) (68 aa) fasta scores: E(): 2.1e-19, 79.1% id in 67 aa, and to Yersinia pestis hypothetical protein ypo3527 or y0656 SWALL:AAM84244 (EMBL:AJ414157) (70 aa) fasta scores: E(): 6.1e-19, 77.27% id in 66 aa. (68 aa)    
Predicted Functional Partners:
ECA3600
Similar to Yersinia pestis putative exported protein ypo3528 SWALL:Q8ZB91 (EMBL:AJ414157) (187 aa) fasta scores: E(): 2.2e-43, 64.76% id in 193 aa, and to Salmonella typhimurium putative transcriptional regulator ytfj or stm4405 SWALL:Q8ZK73 (EMBL:AE008906) (185 aa) fasta scores: E(): 2.7e-42, 68.42% id in 171 aa.
 
    0.825
crl
Curlin genes transcriptional activator; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family.
  
     0.774
viaA
Similar to Escherichia coli O6 hypothetical protein YieM SWALL:AAN83105 (EMBL:AE016769) (483 aa) fasta scores: E(): 1.1e-124, 63.03% id in 487 aa.
  
     0.771
ECA2287
Conserved hypothetical protein; Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 hypothetical protein SWALL:AAO69255 (EMBL:AE016839) (83 aa) fasta scores: E(): 3.7e-19, 66.26% id in 83 aa, and to Yersinia pestis hypothetical protein ypo2217 ypo2217 or y2058 SWALL:Q8ZEF6 (EMBL:AJ414151) (83 aa) fasta scores: E(): 5e-19, 71.42% id in 77 aa.
  
     0.771
atpI
ATP synthase protein I; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri ATP synthase protein I AtpI or UncI or b3739 or c4667 or sf3819 SWALL:ATPZ_ECOLI (SWALL:P03808) (125 aa) fasta scores: E(): 5.7e-21, 57.02% id in 121 aa.
  
     0.759
zapC
Conserved hypothetical protein; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ.
  
     0.750
lpp
Major outer membrane lipoprotein; A highly abundant outer membrane lipoprotein that controls the distance between the inner and outer membranes. The only protein known to be covalently linked to the peptidoglycan network (PGN). Also non-covalently binds the PGN. The link between the cell outer membrane and PGN contributes to maintenance of the structural and functional integrity of the cell envelope, and maintains the correct distance between the PGN and the outer membrane.
  
     0.748
ECA0299
Conserved hypothetical protein; Similar to Yersinia pestis putative anti-sigma B factor antagonist ypo3571 SWALL:Q8ZB54 (EMBL:AJ414157) (100 aa) fasta scores: E(): 3.9e-18, 60.41% id in 96 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein yrbb yrbb or b3191 or sf3231 SWALL:YRBB_ECOLI (SWALL:P45389) (97 aa) fasta scores: E(): 4.6e-11, 40.62% id in 96 aa.
  
     0.744
ECA4240
Similar to Yersinia pestis putative membrane protein ypo3912 or y0323 SWALL:AAM83914 (EMBL:AJ414159) (135 aa) fasta scores: E(): 3e-29, 63.86% id in 119 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yijd or b3964 or c4927 or z5525 or ecs4895 SWALL:YIJD_ECOLI (SWALL:P27308) (119 aa) fasta scores: E(): 4.3e-29, 65.48% id in 113 aa.
  
     0.743
ECA1814
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella typhi hypothetical protein ycfp or stm1210 or sty1250 SWALL:Q8XGQ0 (EMBL:AE008752) (180 aa) fasta scores: E(): 8.5e-62, 82.77% id in 180 aa, and to Yersinia pestis hypothetical protein ypo1616 or y1776 SWALL:AAM85344 (EMBL:AJ414149) (180 aa) fasta scores: E(): 3.8e-61, 81.11% id in 180 aa; Belongs to the UPF0227 family.
  
     0.741
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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