STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3603Putative flavodoxin; Similar to Agrobacterium tumefaciens flavodoxin WrbA or atu4201 or agr_l_1309 SWALL:Q8U897 (EMBL:AE009349) (193 aa) fasta scores: E(): 1.2e-43, 65.73% id in 178 aa, and to Escherichia coli hypothetical 19.6 kDa protein SWALL:Q9F7X7 (EMBL:AF270497) (183 aa) fasta scores: E(): 3.8e-49, 69.78% id in 182 aa. (184 aa)    
Predicted Functional Partners:
ECA0951
Similar to Xanthomonas axonopodis NAD(P)H oxidoreductase xac2229 SWALL:Q8PKE6 (EMBL:AE011860) (198 aa) fasta scores: E(): 1.5e-38, 53.88% id in 193 aa, and to Pseudomonas aeruginosa probable NAD(P)H oxidoreductase pa1225 SWALL:Q9I4B3 (EMBL:AE004552) (208 aa) fasta scores: E(): 1.9e-36, 53.6% id in 194 aa.
    
 0.919
ECA4449
Similar to Escherichia coli hypothetical protein ytfg or b4211 SWALL:YTFG_ECOLI (SWALL:P39315) (286 aa) fasta scores: E(): 6e-61, 66.54% id in 278 aa, and to Yersinia pestis hypothetical protein ypo1645 or y1806 SWALL:Q8ZFP8 (EMBL:AJ414149) (285 aa) fasta scores: E(): 3.2e-65, 68.79% id in 282 aa.
 
  
  0.912
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
  0.900
ECA0923
Similar to Synechocystis sp. hypothetical protein slr0317 SWALL:Q55924 (EMBL:D64005) (287 aa) fasta scores: E(): 3.1e-18, 31.95% id in 291 aa, and to Rhizobium loti hypothetical protein mll1871 SWALL:Q98JM9 (EMBL:AP002998) (293 aa) fasta scores: E(): 2.1e-17, 29.49% id in 295 aa, and to Escherichia coli hypothetical protein YtfG SWALL:YTFG_ECOLI (SWALL:P39315) (286 aa) fasta scores: E(): 1.9e-12, 29.23% id in 236 aa.
    
  0.900
dps
DNA protection during starvation protein; During stationary phase, binds the chromosome non- specifically, forming a highly ordered and stable dps-DNA co-crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction.
  
  
 0.621
ECA1163
Conserved hypothetical lipoprotein; Similar to Salmonella typhimurium glycoprotein/polysaccharide metabolism ybay or stm0465 SWALL:Q8ZRB1 (EMBL:AE008717) (189 aa) fasta scores: E(): 4e-30, 50.78% id in 191 aa, and to Salmonella typhi hypothetical lipoprotein Sty0509 sty0509 SWALL:Q8Z8U2 (EMBL:AL627266) (189 aa) fasta scores: E(): 6.1e-30, 50.26% id in 189 aa.
   
  
 0.609
ECA0639
Similar to Yersinia pestis putative membrane protein ypo0570 SWALL:AAM87157 (EMBL:AJ414143) (101 aa) fasta scores: E(): 2.3e-22, 76.23% id in 101 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein stm3229 or sty3409 SWALL:Q8XEQ1 (EMBL:AE008848) (101 aa) fasta scores: E(): 9.6e-21, 71.28% id in 101 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YqjD SWALL:YQJD_ECOLI (SWALL:P42617) (101 aa) fasta scores: E(): 2.2e-20, 69.3% id in 101 aa.
   
    0.581
pilL
Putative Type IV pilus protein; Similar to Salmonella dublin, and Salmonella typhi PilL SWALL:Q9K334 (EMBL:AF247502) (414 aa) fasta scores: E(): 8.9e-32, 44.98% id in 449 aa, and to Yersinia pseudotuberculosis PilL SWALL:Q8KR32 (EMBL:AY047316) (356 aa) fasta scores: E(): 3.8e-31, 42.72% id in 440 aa.
   
  
 0.555
ECA3015
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein ElaB or stm2311 or sty2542 SWALL:Q8XF60 (EMBL:AE008803) (103 aa) fasta scores: E(): 1e-19, 68.42% id in 95 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ElaB protein ElaB or b2266 or c2810 or z3526 or ecs3154 SWALL:ELAB_ECOLI (SWALL:P52084) (101 aa) fasta scores: E(): 3.3e-19, 65.26% id in 95 aa.
   
    0.553
ECA0640
Putative exported protein; Similar to Salmonella typhimurium, and Salmonella typhi putative periplasmic protein stm3228 or sty3408 SWALL:Q8XF23 (EMBL:AE008848) (122 aa) fasta scores: E(): 1.4e-12, 49.15% id in 118 aa, and to Escherichia coli protein YqjC SWALL:YQJC_ECOLI (SWALL:P42616) (122 aa) fasta scores: E(): 1.6e-12, 50.83% id in 120 aa.
   
    0.540
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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