STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ipdCSimilar to Enterobacter cloacae indole-3-pyruvate decarboxylase IpdC SWALL:DCIP_ENTCL (SWALL:P23234) (552 aa) fasta scores: E(): 1.6e-115, 55.39% id in 556 aa, and to Salmonella typhimurium putative indole-3-pyruvate decarboxylase Ipd or stm2405 SWALL:Q93IM7 (EMBL:AJ401270) (550 aa) fasta scores: E(): 6.1e-118, 55.27% id in 559 aa. (555 aa)    
Predicted Functional Partners:
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
     
 0.947
fom1
Similar to Streptomyces wedmorensis phosphoenolpyruvate phosphomutase Fom1 SWALL:P96074 (EMBL:AB016934) (435 aa) fasta scores: E(): 6.1e-59, 54.26% id in 293 aa, and to Streptomyces hygroscopicus phosphoenolpyruvate phosphomutase BcpB SWALL:PEPM_STRHY (SWALL:P29247) (313 aa) fasta scores: E(): 2.7e-22, 35.39% id in 291 aa.
    
 0.881
trpA
Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
      
 0.710
pgi
Glucose-6-phosphate isomerase; Similar to Escherichia coli, and Escherichia coli O157:H7 glucose-6-phosphate isomerase Pgi or b4025 or z5623 or ecs5008 SWALL:G6PI_ECOLI (SWALL:P11537) (549 aa) fasta scores: E(): 1.4e-193, 86.86% id in 548 aa.
   
 0.669
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
      
 0.654
adhE
Aldehyde-alcohol dehydrogenase; Similar to Escherichia coli, and Escherichia coli O157:H7 aldehyde-alcohol dehydrogenase [includes: alcohol dehydrogenase, acetaldehyde dehydrogenase, and pyruvate-formate-lyase deactivase AdhE or Ana or b1241 or z2016 or ecs1741 SWALL:ADHE_ECOLI (SWALL:P17547) (890 aa) fasta scores: E(): 0, 89.1% id in 890 aa; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 0.631
ECA3198
Putative zinc-binding dehydrogenase; Similar to Escherichia coli hypothetical zinc-type alcohol dehydrogenase-like protein yjgb or b4269 SWALL:YJGB_ECOLI (SWALL:P27250) (339 aa) fasta scores: E(): 2.9e-112, 83.18% id in 339 aa, and to Salmonella typhimurium putative alcohol dehydrogenase yjgb or stm4486 SWALL:Q8ZK20 (EMBL:AE008910) (339 aa) fasta scores: E(): 6.8e-112, 83.48% id in 339 aa.
   
 
 0.627
aspC
Similar to Escherichia coli aspartate aminotransferase AspC or b0928 SWALL:AAT_ECOLI (SWALL:P00509) (396 aa) fasta scores: E(): 1.2e-137, 84.59% id in 396 aa.
   
 0.617
tyrB
Similar to Escherichia coli aromatic-amino-acid aminotransferase tyrb or b4054 SWALL:TYRB_ECOLI (SWALL:P04693) (397 aa) fasta scores: E(): 1.9e-115, 74.24% id in 396 aa.
   
 0.617
calB
Similar to Pseudomonas sp. coniferyl aldehyde dehydrogenase CalB SWALL:CALB_PSESP (SWALL:O86447) (480 aa) fasta scores: E(): 1.4e-97, 55.5% id in 463 aa, and to Caulobacter crescentus probable coniferyl aldehyde dehydrogenase CalB or cc1849 SWALL:CALB_CAUCR (SWALL:Q9A777) (485 aa) fasta scores: E(): 2.5e-85, 50.96% id in 467 aa.
   
 0.589
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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