Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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co-expression
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gene co-occurrence
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[Homology]
Score
ECA3627Putative alanine racemase; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis. (237 aa)    
Predicted Functional Partners:
ECA3629
Similar to Yersinia pestis putative membrane protein ypo0943 or y3329 SWALL:Q8ZHF6 (EMBL:AJ414145) (184 aa) fasta scores: E(): 5.8e-58, 78.26% id in 184 aa, and to Vibrio cholerae hypothetical protein Vc0459 SWALL:Q9KUQ6 (EMBL:AE004132) (185 aa) fasta scores: E(): 2.3e-42, 56.21% id in 185 aa.
  
  
 0.787
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
 
  
 0.697
ECA3346
Similar to Yersinia pestis hypothetical protein ypo3276 or y0913 SWALL:Q8ZBV8 (EMBL:AJ414156) (243 aa) fasta scores: E(): 1.6e-62, 66.25% id in 240 aa, and to Salmonella typhi hypothetical protein Sty2850 SWALL:Q8Z4J1 (EMBL:AL627276) (243 aa) fasta scores: E(): 9.7e-62, 64.16% id in 240 aa; Belongs to the multicopper oxidase YfiH/RL5 family.
 
  
 0.676
ECA3632
Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
     0.626
ECA3626
Putative type II/IV secretion system protein; Similar to Escherichia coli hypothetical protein yggr or b2950 SWALL:YGGR_ECOLI (SWALL:P52052) (326 aa) fasta scores: E(): 4e-63, 60.67% id in 328 aa, and to Yersinia pestis hypothetical protein Ypo0940 SWALL:Q8ZHF9 (EMBL:AJ414145) (358 aa) fasta scores: E(): 1.4e-65, 60.92% id in 325 aa.
       0.607
ECA0270
Conserved hypothetical protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
    0.599
ECA3630
Similar to Salmonella typhi hypothetical upf0235 protein yggu or sty3255 or t3014 SWALL:AAO70566 (EMBL:AL627277) (96 aa) fasta scores: E(): 1.1e-27, 78.12% id in 96 aa, and to Escherichia coli hypothetical upf0235 protein yggu or b2953 SWALL:YGGU_ECOLI (SWALL:P52060) (96 aa) fasta scores: E(): 2.6e-26, 76.84% id in 95 aa.
  
  
 0.597
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
 
    0.593
rpmC
50S ribosomal subunit protein L29; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 50S ribosomal protein L29 RpmC or b3312 or c4077 or z4683 or ecs4177 SWALL:RL29_ECOLI (SWALL:P02429) (63 aa) fasta scores: E(): 2.5e-18, 84.12% id in 63 aa; Belongs to the universal ribosomal protein uL29 family.
  
    0.586
pdxY
Pyridoxamine kinase; Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP.
  
  
 0.581
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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