STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3645Similar to Bacillus subtilis PTS system, lichenan-specific IIb component LicB or CelA SWALL:PTCB_BACSU (SWALL:P46318) (102 aa) fasta scores: E(): 2.9e-11, 46% id in 100 aa. (105 aa)    
Predicted Functional Partners:
ECA3136
PTS system, cellobiose-specific IIa component; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, cellobiose-specific IIa component CelC or b1736 or c2135 or z2766 or ecs2442 or sf1490 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 3.9e-10, 41.23% id in 97 aa, and to Yersinia pestis PTS system, cellobiose-specific IIa component CelC or ypo2680 or y1253 SWALL:AAM84827 (EMBL:AJ414153) (115 aa) fasta scores: E(): 3.6e-12, 45.91% id in 98 aa.
 
 0.991
ECA3648
PTS system, cellobiose-specific IIa component; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, cellobiose-specific IIa component CelC or b1736 or c2135 or z2766 or ecs2442 or sf1490 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 6.3e-14, 43.86% id in 114 aa.
 
 0.990
licC
PTS system, lichenan-specific IIc component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
 
 0.986
ECA2489
PTS system, cellobiose-specific IIa component; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, cellobiose-specific IIa component CelC or b1736 or c2135 or z2766 or ecs2442 or sf1490 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 1.8e-14, 48.45% id in 97 aa.
 
 0.985
ECA4433
Pts system, cellobiose-specific IIa component; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, cellobiose-specific IIa component celc or b1736 or c2135 or z2766 or ecs2442 or sf1490 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 8e-14, 47.47% id in 99 aa.
 
 0.985
ECA2488
PTS system, cellobiose-specific IIc component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
 
 0.966
ECA4408
PTS system EIIc component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
 
 0.966
ECA4434
PTS system, IIbc component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
 
 0.966
celH
Similar to Bacillus pumilus putative 6-phospho-beta-glucosidase CelH SWALL:Q8KP27 (EMBL:AY124778) (466 aa) fasta scores: E(): 5.1e-82, 42.98% id in 463 aa; Belongs to the glycosyl hydrolase 1 family.
 
 
 0.942
ECA4409
Similar to Bacillus stearothermophilus PTS system, cellobiose-specific IIb component celA SWALL:PTCB_BACST (SWALL:Q45399) (100 aa) fasta scores: E(): 9.2e-14, 50.52% id in 95 aa.
  
  
 
0.913
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.