STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3650Similar to Salmonella typhi putative DNA-binding protein sty3832 SWALL:Q8Z2V1 (EMBL:AL627279) (188 aa) fasta scores: E(): 2.3e-32, 53.37% id in 178 aa, and to Agrobacterium tumefaciens Tiorf88 protein tiorf88 SWALL:Q9R6H1 (EMBL:AB016260) (163 aa) fasta scores: E(): 1e-21, 42.5% id in 160 aa. (184 aa)    
Predicted Functional Partners:
ECA3651
Putative membrane protein; Similar to Rhizobium loti hypothetical protein Mlr3911 SWALL:Q98F65 (EMBL:AP003003) (301 aa) fasta scores: E(): 5.7e-63, 58.68% id in 288 aa, and to Pseudomonas putida membrane protein, putative pp4307 SWALL:AAN69887 (EMBL:AE016790) (307 aa) fasta scores: E(): 2.2e-59, 54.86% id in 288 aa.
 
     0.606
ECA3412
Hypothetical protein; No significant database matches.
  
     0.456
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
 
   
 0.441
cfa7
Similar to Pseudomonas syringae type I polyketide synthase Cfa7 SWALL:Q9Z3T8 (EMBL:AF098795) (2066 aa) fasta scores: E(): 0, 52.6% id in 2091 aa, and to Streptomyces coelicolor putative type I polyketide synthase sco6275 SWALL:CAD55506 (EMBL:AL939127) (4557 aa) fasta scores: E(): 3e-183, 44.33% id in 1845 aa.
  
     0.415
ECA4255
Similar to Rhizobium loti iron(III) ABC transporter, periplasmic-binding protein mlr8228 SWALL:Q983Q2 (EMBL:AP003013) (315 aa) fasta scores: E(): 8e-77, 62.38% id in 319 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2913 pa2913 SWALL:Q9HZT4 (EMBL:AE004717) (323 aa) fasta scores: E(): 1.3e-50, 45.57% id in 316 aa.
  
     0.402
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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