Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ECA3651Putative membrane protein; Similar to Rhizobium loti hypothetical protein Mlr3911 SWALL:Q98F65 (EMBL:AP003003) (301 aa) fasta scores: E(): 5.7e-63, 58.68% id in 288 aa, and to Pseudomonas putida membrane protein, putative pp4307 SWALL:AAN69887 (EMBL:AE016790) (307 aa) fasta scores: E(): 2.2e-59, 54.86% id in 288 aa. (318 aa)    
Predicted Functional Partners:
ECA3650
Similar to Salmonella typhi putative DNA-binding protein sty3832 SWALL:Q8Z2V1 (EMBL:AL627279) (188 aa) fasta scores: E(): 2.3e-32, 53.37% id in 178 aa, and to Agrobacterium tumefaciens Tiorf88 protein tiorf88 SWALL:Q9R6H1 (EMBL:AB016260) (163 aa) fasta scores: E(): 1e-21, 42.5% id in 160 aa.
 
     0.606
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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