STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3654Similar to Yersinia pestis LysR-family transcriptional regulatory protein ypo0799 or y3187 SWALL:Q8ZHT5 (EMBL:AJ414144) (302 aa) fasta scores: E(): 3e-85, 71.38% id in 297 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa0056 SWALL:Q9I776 (EMBL:AE004445) (306 aa) fasta scores: E(): 5e-70, 61.27% id in 297 aa. (302 aa)    
Predicted Functional Partners:
ECA3952
Similar to Pseudomonas putida transcriptional regulator, LysR family pp0698 SWALL:AAN66323 (EMBL:AE016776) (305 aa) fasta scores: E(): 3.1e-76, 64.93% id in 288 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glycine cleavage system transcriptional activator gcva or b2808 or c3378 or z4125 or ecs3668 SWALL:GCVA_ECOLI (SWALL:P32064) (305 aa) fasta scores: E(): 6.4e-26, 33.67% id in 297 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.688
ECA3656
Similar to Yersinia pestis hypothetical protein ypo0801 or y3189 SWALL:Q8ZHT3 (EMBL:AJ414144) (211 aa) fasta scores: E(): 9.3e-45, 55.23% id in 210 aa, and to Ralstonia solanacearum hypothetical protein rsc1444 or rs03863 SWALL:Q8XZF7 (EMBL:AL646064) (242 aa) fasta scores: E(): 1e-44, 52.29% id in 218 aa.
 
     0.668
ECA3655
Similar to Yersinia pestis putative exported protein ypo0800 SWALL:Q8ZHT4 (EMBL:AJ414144) (295 aa) fasta scores: E(): 1.1e-70, 64.84% id in 293 aa, and to Shewanella oneidensis metallo-beta-lactamase family protein so3474 SWALL:AAN56467 (EMBL:AE015783) (299 aa) fasta scores: E(): 4.7e-56, 52.06% id in 290 aa.
 
    0.644
ECA0427
Similar to Brucella melitensis transcriptional regulatory protein, LysR family bmei0116 SWALL:Q8YJG7 (EMBL:AE009454) (308 aa) fasta scores: E(): 1.7e-24, 29.18% id in 305 aa.
  
     0.639
sftR
LysR-family transcriptional regulator; Similar to Pseudomonas putida SftR SWALL:Q9WWU4 (EMBL:AF126201) (304 aa) fasta scores: E(): 1.2e-43, 42.19% id in 301 aa, and to Pseudomonas sp. SDS degradation transcriptional activation protein sdsB SWALL:SDSB_PSES9 (SWALL:P52686) (306 aa) fasta scores: E(): 1.3e-30, 36.53% id in 312 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.599
ECA4427
LysR-family transcriptional regulator; Similar to Agrobacterium tumefaciens regulatory protein NocR or atu6029 or agr_pti_70 SWALL:NOCR_AGRT5 (SWALL:Q00678) (300 aa) fasta scores: E(): 1.4e-28, 35.29% id in 289 aa, and to Rhizobium meliloti octopine catabolism/uptake operon regulatory protein OccR SWALL:OCCR_RHIME (SWALL:P72294) (297 aa) fasta scores: E(): 5.8e-23, 36.58% id in 287 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.562
sftR-2
LysR-family transcriptional regulator; Similar to Pseudomonas putida SftR SWALL:Q9WWU4 (EMBL:AF126201) (304 aa) fasta scores: E(): 6.9e-58, 50.82% id in 303 aa, and to Pseudomonas sp. SDS degradation transcriptional activation protein SdsB SWALL:SDSB_PSES9 (SWALL:P52686) (306 aa) fasta scores: E(): 2.3e-29, 37.58% id in 314 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.557
ECA0905
Similar to Yersinia pestis putative LysR-family transcriptional regulatory protein ypo2979 SWALL:Q8ZCK5 (EMBL:AJ414154) (292 aa) fasta scores: E(): 1.7e-70, 64.08% id in 284 aa, and to Salmonella typhi possible regulatory protein sty3165 SWALL:Q8Z3Z7 (EMBL:AL627277) (287 aa) fasta scores: E(): 3.8e-56, 55.35% id in 280 aa.
  
     0.550
ECA1602
Similar to Pseudomonas fluorescens putative transcriptional regulator SWALL:AAN32873 (EMBL:AF461725) (238 aa) fasta scores: E(): 4.6e-57, 60.92% id in 238 aa, and to Ralstonia solanacearum probable transcription regulator transcription regulator protein rsp1593 or rs02150 SWALL:Q8XPP5 (EMBL:AL646085) (296 aa) fasta scores: E(): 6e-39, 40.13% id in 294 aa. Also similar to ECA2976 (96.026% id. in 302 aa overlap); Belongs to the LysR transcriptional regulatory family.
  
     0.550
ECA0916
LysR-family transcriptional regulator; Similar to Listeria innocua transcription activator of glutamate synthase operon GltC SWALL:Q92AS3 (EMBL:AL596170) (295 aa) fasta scores: E(): 8.3e-15, 25.25% id in 293 aa, and to Acinetobacter calcoaceticus ben and cat operon transcriptional regulator BenM SWALL:BENM_ACICA (SWALL:O68014) (304 aa) fasta scores: E(): 1.3e-11, 25% id in 272 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.536
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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