STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3655Similar to Yersinia pestis putative exported protein ypo0800 SWALL:Q8ZHT4 (EMBL:AJ414144) (295 aa) fasta scores: E(): 1.1e-70, 64.84% id in 293 aa, and to Shewanella oneidensis metallo-beta-lactamase family protein so3474 SWALL:AAN56467 (EMBL:AE015783) (299 aa) fasta scores: E(): 4.7e-56, 52.06% id in 290 aa. (293 aa)    
Predicted Functional Partners:
ECA3656
Similar to Yersinia pestis hypothetical protein ypo0801 or y3189 SWALL:Q8ZHT3 (EMBL:AJ414144) (211 aa) fasta scores: E(): 9.3e-45, 55.23% id in 210 aa, and to Ralstonia solanacearum hypothetical protein rsc1444 or rs03863 SWALL:Q8XZF7 (EMBL:AL646064) (242 aa) fasta scores: E(): 1e-44, 52.29% id in 218 aa.
 
    0.926
ECA3654
Similar to Yersinia pestis LysR-family transcriptional regulatory protein ypo0799 or y3187 SWALL:Q8ZHT5 (EMBL:AJ414144) (302 aa) fasta scores: E(): 3e-85, 71.38% id in 297 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa0056 SWALL:Q9I776 (EMBL:AE004445) (306 aa) fasta scores: E(): 5e-70, 61.27% id in 297 aa.
 
    0.644
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
 
 0.576
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
   
 
 0.539
ECA3657
Putative exported protein; No significant database matches.
       0.447
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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