STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alrAlanine racemase, biosynthetic; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (360 aa)    
Predicted Functional Partners:
ddlB
D-alanine--D-alanine ligase B; Cell wall formation.
 
 
 0.982
putA
Bifunctional PutA protein [includes: proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
   
 
 0.978
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
 0.975
ECA3033
Probable aminotransferase; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri probable aminotransferase yfbq or b2290 or c2831 or sf2366 SWALL:YFBQ_ECOLI (SWALL:P77727) (405 aa) fasta scores: E(): 1.8e-148, 89.6% id in 404 aa, and to Salmonella typhi putative aminotransferase t0533 SWALL:AAO68239 (EMBL:AE016836) (404 aa) fasta scores: E(): 2.3e-150, 91.58% id in 404 aa.
    
 0.973
dat-2
Similar to Staphylococcus haemolyticus D-alanine aminotransferase Dat SWALL:DAAA_STAHA (SWALL:P54694) (282 aa) fasta scores: E(): 4.8e-36, 38.57% id in 280 aa, and to Agrobacterium tumefaciens D-alanine aminotransferase Dat or atu5473 or agr_pat_698 SWALL:Q8UJK4 (EMBL:AE008968) (290 aa) fasta scores: E(): 6.7e-61, 55.39% id in 278 aa.
    
 0.960
glnA
Glutamine synthetase; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri glutamine synthetase GlnA or b3870 or c4819 or z5406 or ecs4792 or sf3940 SWALL:GLNA_ECOLI (SWALL:P06711) (468 aa) fasta scores: E(): 3e-170, 90.17% id in 468 aa.
     
 0.952
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
    
  0.949
gdhA
Similar to Escherichia coli NADP-specific glutamate dehydrogenase GdhA or b1761 SWALL:DHE4_ECOLI (SWALL:P00370) (447 aa) fasta scores: E(): 7.7e-145, 85.01% id in 447 aa; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
 0.947
ECA3127
Similar to Bos taurus acyl carrier protein, mitochondrial ndufab1 SWALL:ACPM_BOVIN (SWALL:P52505) (88 aa) fasta scores: E(): 0.18, 27.94% id in 68 aa, and to Fusobacterium nucleatum acyl carrier protein acpp or fn0150 SWALL:ACP_FUSNN (SWALL:Q8RGX5) (75 aa) fasta scores: E(): 1.9, 30.66% id in 75 aa.
    
  0.945
dltA
Similar to Staphylococcus aureus D-alanine--poly(phosphoribitol) ligase subunit 1 DltA or mw0814 SWALL:DLTA_STAAW (SWALL:Q9S673) (485 aa) fasta scores: E(): 1.8e-42, 37.15% id in 471 aa, and to Lactococcus lactis D-alanine--poly(phosphoribitol) ligase subunit 1 DltA or ll1261 SWALL:DLTA_LACLA (SWALL:Q9CG49) (499 aa) fasta scores: E(): 1.3e-37, 32.03% id in 487 aa.
     
 0.945
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.