STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3671Similar to Pseudomonas putida conserved hypothetical protein pp4958 SWALL:AAN70525 (EMBL:AE016792) (179 aa) fasta scores: E(): 4.7e-39, 59.25% id in 162 aa, and to Escherichia coli hypothetical protein ygjp or b3085 SWALL:YGJP_ECOLI (SWALL:P42597) (179 aa) fasta scores: E(): 2.5e-38, 61.14% id in 157 aa. (165 aa)    
Predicted Functional Partners:
rlmF
Conserved hypothetical protein; Specifically methylates the adenine in position 1618 of 23S rRNA.
 
     0.577
ECA2987
Similar to Escherichia coli hypothetical protein yehs or b2124 SWALL:YEHS_ECOLI (SWALL:P33355) (156 aa) fasta scores: E(): 1.4e-37, 62.82% id in 156 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yehs or stm2157 or sty2387 SWALL:Q8XEY4 (EMBL:AE008796) (155 aa) fasta scores: E(): 1e-36, 64% id in 150 aa.
 
    0.565
ECA2239
Similar to Erwinia pyrifoliae conserved hypothetical protein SWALL:AAN04552 (EMBL:AY123045) (94 aa) fasta scores: E(): 2.6e-22, 66.31% id in 95 aa, and to Yersinia pestis hypothetical protein ypo1157 or y3025 SWALL:Q8ZGW6 (EMBL:AJ414146) (81 aa) fasta scores: E(): 2.7e-16, 63.51% id in 74 aa.
 
     0.547
ECA1051
Similar to Yersinia pestis hypothetical protein Ypo1065 SWALL:Q8ZH46 (EMBL:AJ414146) (182 aa) fasta scores: E(): 2.4e-56, 75.28% id in 178 aa, and to Escherichia coli O6 hypothetical protein yaeq or c0229 SWALL:AAN78721 (EMBL:AE016755) (181 aa) fasta scores: E(): 6e-48, 62.22% id in 180 aa.
 
    0.546
tyrB
Similar to Escherichia coli aromatic-amino-acid aminotransferase tyrb or b4054 SWALL:TYRB_ECOLI (SWALL:P04693) (397 aa) fasta scores: E(): 1.9e-115, 74.24% id in 396 aa.
 
     0.516
ECA3672
Similar to Escherichia coli O6 conserved hypothetical protein c3767 SWALL:AAN82211 (EMBL:AE016766) (159 aa) fasta scores: E(): 1.4e-29, 51.28% id in 156 aa, and to Yersinia pestis putative membrane protein ypo2793 or y1136 SWALL:AAM84714 (EMBL:AJ414153) (190 aa) fasta scores: E(): 3.7e-51, 79.48% id in 156 aa.
       0.501
ppnP
Conserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
  
     0.447
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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