Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA3675Putative membrane protein; Similar to Yersinia pestis hypothetical protein ypo2788 or y1139 SWALL:Q8ZD09 (EMBL:AJ414153) (193 aa) fasta scores: E(): 5.5e-56, 73.95% id in 192 aa. (286 aa)    
Predicted Functional Partners:
ECA3674
Similar to Yersinia pestis putative membrane protein ypo2790 SWALL:Q8ZD08 (EMBL:AJ414153) (133 aa) fasta scores: E(): 5e-30, 57.57% id in 132 aa.
       0.773
ECA0587
Conserved hypothetical protein; Similar to Yersinia pestis putative DNA-binding prophage protein ypo1092 SWALL:Q8ZH21 (EMBL:AJ414146) (298 aa) fasta scores: E(): 4.4e-48, 48.79% id in 291 aa, and to Salmonella typhi hypothetical protein sty4586 SWALL:Q8Z1I0 (EMBL:AL627282) (306 aa) fasta scores: E(): 3e-46, 46.57% id in 292 aa, and to Salmonella typhimurium putative integrase stm2760 SWALL:Q8ZMP4 (EMBL:AE008825) (291 aa) fasta scores: E(): 9.7e-46, 46.07% id in 293 aa.
  
     0.762
ECA2852
Conserved hypothetical protein; Similar to Shigella flexneri 2a hypothetical 32.7 kDa protein SWALL:Q9AL39 (EMBL:AF200692) (280 aa) fasta scores: E(): 5.7e-66, 59.55% id in 272 aa, and to Escherichia coli Z1226 protein z1226 SWALL:CAD33792 (EMBL:AJ488511) (281 aa) fasta scores: E(): 8.4e-69, 62.59% id in 270 aa.
  
     0.636
virB9
Putative conjugal transfer protein; Similar to Escherichia coli VirB9 protein VirB9 SWALL:Q91UW8 (EMBL:AJ297913) (290 aa) fasta scores: E(): 2.5e-15, 32.52% id in 289 aa.
  
     0.617
ECA4495
Putative lipoprotein; Similar to Escherichia coli O157:H7 z4862 protein z4862 or ecs4337 SWALL:Q8X6L1 (EMBL:AE005571) (194 aa) fasta scores: E(): 2.6e-49, 65.4% id in 185 aa, and to Vibrio vulnificus conserved hypothetical protein vv10057 SWALL:AAO08599 (EMBL:AE016797) (183 aa) fasta scores: E(): 2.9e-09, 35.22% id in 159 aa.
  
     0.593
virB10
Putative conjugal transfer protein; Similar to Escherichia coli Virb10 protein VirB10 SWALL:Q91UW7 (EMBL:AJ297913) (383 aa) fasta scores: E(): 1.2e-23, 32.41% id in 401 aa.
  
     0.581
nadR
Similar to Salmonella typhimurium transcriptional regulator NadR SWALL:NADR_SALTY (SWALL:P24518) (410 aa) fasta scores: E(): 1.1e-140, 85.5% id in 407 aa, and to Escherichia coli transcriptional regulator NadR or NadI or b4390 SWALL:NADR_ECOLI (SWALL:P27278) (410 aa) fasta scores: E(): 2.2e-139, 83.9% id in 410 aa.
     
  0.555
ECA1054
Similar to Escherichia coli putative prophage cp4-6 integrase IntF or b0281 SWALL:INTF_ECOLI (SWALL:P71298) (466 aa) fasta scores: E(): 0.0029, 24.6% id in 443 aa, and to Xylella fastidiosa phage-related integrase xf0631 SWALL:Q9PFM6 (EMBL:AE003908) (413 aa) fasta scores: E(): 1.2, 24.71% id in 445 aa.
  
     0.551
virB4
Putative conjugal transfer protein; Similar to Escherichia coli VirB4 protein VirB4 SWALL:Q91UX4 (EMBL:AJ297913) (826 aa) fasta scores: E(): 2.4e-90, 34.71% id in 818 aa.
  
     0.538
ECA4496
Putative membrane protein; Similar to Escherichia coli O6 conserved hypothetical protein c1191 SWALL:AAN79653 (EMBL:AE016758) (772 aa) fasta scores: E(): 8.3e-184, 64.43% id in 762 aa, and to Vibrio vulnificus predicted exporter vv10056 SWALL:AAO08598 (EMBL:AE016797) (756 aa) fasta scores: E(): 5.4e-85, 36.17% id in 763 aa.
  
     0.534
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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