STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mcKPutative plasmid-related protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (138 aa)    
Predicted Functional Partners:
vagC
Plasmid-associated protein; Similar to Salmonella dublin virulence-associated protein VagC SWALL:VAGC_SALDU (SWALL:Q05459) (76 aa) fasta scores: E(): 3.8e-22, 77.63% id in 76 aa, and to Salmonella typhimurium Kor protein Kor SWALL:Q8L236 (EMBL:AP005147) (76 aa) fasta scores: E(): 6.3e-22, 76.31% id in 76 aa.
 
   
 0.964
mvpT
Putative plasmid protein; Similar to Shigella flexneri MvpT protein SWALL:CAC05863 (EMBL:AL391753) (75 aa) fasta scores: E(): 8e-18, 68.91% id in 74 aa, and to Salmonella dublin virulence-associated protein VagC SWALL:VAGC_SALDU (SWALL:Q05459) (76 aa) fasta scores: E(): 0.0048, 31.81% id in 66 aa.
 
 
 0.947
ECA0959
Putative acetyltransferase; Similar to Salmonella typhi hypothetical protein Sty4668 SWALL:Q8Z1C2 (EMBL:AL627283) (162 aa) fasta scores: E(): 2.2e-45, 89.05% id in 137 aa, and to Salmonella typhimurium putative acetyltransferase stm4318 SWALL:Q8ZKC6 (EMBL:AE008902) (163 aa) fasta scores: E(): 2.7e-43, 84.28% id in 140 aa.
  
     0.680
ECA0958
Similar to Salmonella typhi hypothetical protein Sty4517 SWALL:Q8Z1M5 (EMBL:AL627282) (97 aa) fasta scores: E(): 3.4e-31, 89.69% id in 97 aa, and to Xanthomonas campestris hypothetical protein Xcc3104 SWALL:Q8P668 (EMBL:AE012426) (96 aa) fasta scores: E(): 2.5e-23, 72.63% id in 95 aa.
  
     0.638
ECA0366
Similar to Escherichia coli O6 hypothetical protein c3274 SWALL:AAN81723 (EMBL:AE016765) (103 aa) fasta scores: E(): 2.1e-22, 55.34% id in 103 aa.
  
     0.613
chpA
Putative growth inhibitory protein; Similar to Escherichia coli, and Escherichia coli O157:H7 PemK-like protein 1 ChpA or MazF or ChpaK or b2782 or z4097 or ecs3642 SWALL:CHPA_ECOLI (SWALL:P33645) (111 aa) fasta scores: E(): 5.2e-31, 72.97% id in 111 aa, and to Deinococcus radiodurans ppgpp-regulated growth inhibitor chpa/mazf, putative dr0417 SWALL:Q9RX98 (EMBL:AE001901) (117 aa) fasta scores: E(): 5e-18, 48.21% id in 112 aa.
 
   
 0.578
ECA0367
Putative DNA-binding protein; Similar to Escherichia coli O6 hypothetical protein YgjM c3273 SWALL:AAN81722 (EMBL:AE016765) (139 aa) fasta scores: E(): 1.1e-21, 50% id in 134 aa.
  
     0.576
ECA2988
Conserved hypothetical protein (partial); Similar to the C-terminal region of many including Salmonella typhimurium putative inner membrane protein stm4518 SWALL:Q8ZJZ4 (EMBL:AE008912) (171 aa) fasta scores: E(): 0.0011, 36.61% id in 71 aa, and to Escherichia coli, and Salmonella typhimurium ydga protein ydga or ygdB SWALL:Q9Z4C7 (EMBL:AB021078) (313 aa) fasta scores: E(): 6.5e-07, 49.25% id in 67 aa, and to Photorhabdus luminescens putative truncated transposase SWALL:Q937N5 (EMBL:AF346497) (79 aa) fasta scores: E(): 0.069, 36% id in 75 aa.
  
     0.540
parE
Topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
      
 0.530
ECA3685
Conserved hypothetical protein; Similar to Vibrio metschnikovii Orfc273-4 orfc273-4 SWALL:AAN33037 (EMBL:AF530480) (111 aa) fasta scores: E(): 0.039, 49.02% id in 51 aa, and to Escherichia coli O6 hypothetical protein c1020 SWALL:AAN79492 (EMBL:AE016758) (130 aa) fasta scores: E(): 0.34, 36.61% id in 71 aa.
       0.520
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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