STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3688Similar to Vibrio cholerae hypothetical protein Vc0373 SWALL:Q9KUY5 (EMBL:AE004125) (139 aa) fasta scores: E(): 4e-37, 64.02% id in 139 aa, and to Pseudomonas stutzeri pa5286-like protein SWALL:Q8RPA9 (EMBL:AF414717) (141 aa) fasta scores: E(): 2.1e-34, 60.87% id in 138 aa. (139 aa)    
Predicted Functional Partners:
uvrA
Excision nuclease subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
       0.745
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
 
     0.694
ECA1591
Conserved hypothetical protein; Similar over its C-terminal region to many including Salmonella typhimurium putative cytoplasmic protein ybdf or stm0579 SWALL:Q8ZR44 (EMBL:AE008722) (122 aa) fasta scores: E(): 1.8e-09, 33.89% id in 118 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein ybdf or b0579 or z0718 or ecs0617 SWALL:YBDF_ECOLI (SWALL:P39454) (122 aa) fasta scores: E(): 2.2e-07, 33.04% id in 115 aa.
  
  
 0.683
ECA1595
Similar to Ralstonia solanacearum hypothetical protein rsc2592 or rs00840 SWALL:Q8XW83 (EMBL:AL646070) (118 aa) fasta scores: E(): 2.1e-19, 43.96% id in 116 aa, and to Oceanobacillus iheyensis hypothetical conserved protein ob1254 SWALL:BAC13210 (EMBL:AP004597) (118 aa) fasta scores: E(): 2.9e-19, 41.02% id in 117 aa.
  
  
 0.505
ssb
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
       0.473
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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