STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3693Conserved hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (143 aa)    
Predicted Functional Partners:
ECA3694
Hypothetical protein; Similar to the C-terminal regions of Escherichia coli PhnO protein or b4093 SWALL:PHNO_ECOLI (SWALL:P16691) (144 aa) fasta scores: E(): 1.7, 37.2% id in 43 aa, and to Streptomyces griseus regulatory protein for c-p lyase PhnO-likE SWALL:Q54244 (EMBL:D29961) (150 aa) fasta scores: E(): 0.29, 35.71% id in 42 aa.
       0.511
pcaB
Similar to Acinetobacter calcoaceticus 3-carboxy-cis,cis-muconate cycloisomerase PcaB SWALL:PCAB_ACICA (SWALL:Q59092) (452 aa) fasta scores: E(): 2.3e-62, 41.03% id in 446 aa, and to Bradyrhizobium japonicum pcab protein PcaB or bll7942 SWALL:BAC53207 (EMBL:AP005964) (453 aa) fasta scores: E(): 1.1e-126, 72.93% id in 447 aa.
     
  0.499
ECA3744
GntR-family transcriptional regulator; Similar to Escherichia coli O157:H7 z3973 protein z3973 or ecs3534 SWALL:Q8X922 (EMBL:AE005496) (444 aa) fasta scores: E(): 1.8e-78, 47.91% id in 455 aa, and to Salmonella typhimurium putative regulatory protein, GntR family stm2803 SWALL:Q8ZML3 (EMBL:AE008828) (444 aa) fasta scores: E(): 5.4e-76, 47.91% id in 455 aa.
 
     0.495
ECA2654
GntR-family transcriptional regulator; Similar to Rhizobium meliloti probable rhizopine catabolism regulatory protein MocR SWALL:MOCR_RHIME (SWALL:P49309) (493 aa) fasta scores: E(): 3.2e-48, 36.95% id in 433 aa, and to Escherichia coli O157:H7 z3973 protein z3973 or ecs3534 SWALL:Q8X922 (EMBL:AE005496) (444 aa) fasta scores: E(): 2.4e-54, 43.8% id in 452 aa.
 
     0.482
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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