STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3707Putative phage-related DNA-binding protein; Similar to Neisseria meningitidis hypothetical protein Nmb1004 SWALL:Q9JZL2 (EMBL:AE002451) (81 aa) fasta scores: E(): 5.8e-07, 48.21% id in 56 aa, and to Xanthomonas campestris hypothetical protein Xcc2998 SWALL:Q8P6H1 (EMBL:AE012413) (84 aa) fasta scores: E(): 0.01, 36.06% id in 61 aa. (62 aa)    
Predicted Functional Partners:
ECA3703
Conserved hypothetical phage-related protein; Similar to Salmonella typhi Eha SWALL:O87649 (EMBL:AF091717) (322 aa) fasta scores: E(): 1.5e-63, 86.9% id in 229 aa, and to Vibrio cholerae Eha protein vc1798 SWALL:Q9KR48 (EMBL:AE004256) (383 aa) fasta scores: E(): 6.4e-25, 40.15% id in 386 aa.
 
     0.918
ECA3704
Similar to Salmonella typhi hypothetical protein Sty1604 SWALL:Q8Z6W2 (EMBL:AL627270) (589 aa) fasta scores: E(): 4.3e-189, 82% id in 589 aa, and to Vibrio cholerae hypothetical protein Vc1799 SWALL:Q9KR47 (EMBL:AE004256) (585 aa) fasta scores: E(): 1.4e-49, 33.63% id in 559 aa.
 
     0.911
ECA3700
Similar to Neisseria meningitidis hypothetical protein nma1871 or rth11 SWALL:Q9JRE4 (EMBL:AL162757) (203 aa) fasta scores: E(): 7e-29, 41% id in 200 aa, and to Shewanella oneidensis conserved hypothetical protein so0648 SWALL:AAN53726 (EMBL:AE015511) (208 aa) fasta scores: E(): 1.5e-21, 33.84% id in 195 aa.
 
     0.879
ECA3708
Similar to Ralstonia solanacearum putative DNA-binding repressor transcription regulator protein rsc1907 or rs03481 SWALL:Q8XY56 (EMBL:AL646067) (173 aa) fasta scores: E(): 3.9e-09, 50.6% id in 83 aa.
 
     0.873
ECA3696
Similar to Bacteriophage Mu protein gemA SWALL:VG16_BPMU (SWALL:Q38494) (183 aa) fasta scores: E(): 1.3e-16, 43.66% id in 142 aa, and to Salmonella typhi hypothetical protein Sty1592 sty1592 SWALL:Q8Z6X2 (EMBL:AL627270) (150 aa) fasta scores: E(): 2.8e-32, 64.44% id in 135 aa.
 
     0.865
ECA3695
Phage regulatory protein protein; Similar to Bacteriophage Mu positive regulator of late transcription C SWALL:VPC_BPMU (SWALL:P06022) (140 aa) fasta scores: E(): 0.00077, 32.14% id in 112 aa and to Erwinia carotovora DNA-binding protein RdgB SWALL:RDGB_ERWCA (SWALL:Q47588) (117 aa) fasta scores: E(): 1.8e-22, 60.19% id in 103 aa, and to Salmonella typhi putative bacteriophage transcriptional regulator sty1591 SWALL:Q8Z6X3 (EMBL:AL627270) (129 aa) fasta scores: E(): 5.5e-35, 67.44% id in 129 aa. Also similar to ECA2437 (59.259% id. in 108 aa overlap).
 
     0.863
ECA3718
Conserved hypothetical phage-related protein; Similar to Bacteriophage Mu protein gp27 SWALL:VG27_BPMU (SWALL:Q9T1W7) (191 aa) fasta scores: E(): 0.0026, 22.87% id in 188 aa. Also similar to Salmonella typhi prophage-related protein Sty1614 SWALL:Q8Z6V2 (EMBL:AL627270) (181 aa) fasta scores: E(): 5.4e-54, 91.16% id in 181 aa.
 
     0.827
ECA3717
Similar to Salmonella typhi hypothetical protein Sty1613 SWALL:Q8Z6V3 (EMBL:AL627270) (103 aa) fasta scores: E(): 3.7e-38, 93.2% id in 103 aa.
 
     0.820
ECA3716
Similar to Salmonella typhimurium putative inner membrane protein stm4216 SWALL:Q8ZKI9 (EMBL:AE008897) (104 aa) fasta scores: E(): 2.8e-25, 70.29% id in 101 aa, and to Salmonella typhi putative membrane protein sty1612 SWALL:Q8Z6V4 (EMBL:AL627270) (108 aa) fasta scores: E(): 8.4e-22, 61.11% id in 108 aa.
 
     0.818
ECA3720
Putative phage-related protein; Similar to Bacteriophage Mu protein gp29 29 SWALL:VG29_BPMU (SWALL:Q9T1W5) (512 aa) fasta scores: E(): 1.2e-15, 26.52% id in 524 aa and to Salmonella typhi prophage related-protein Sty1616 SWALL:Q8Z6V0 (EMBL:AL627270) (498 aa) fasta scores: E(): 9.4e-146, 72.9% id in 502 aa.
 
     0.817
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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