STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3710Putative phage-related lipoprotein; No significant database matches. (314 aa)    
Predicted Functional Partners:
ECA3709
Putative phage-related membrane protein; No significant database matches.
       0.658
ECA3708
Similar to Ralstonia solanacearum putative DNA-binding repressor transcription regulator protein rsc1907 or rs03481 SWALL:Q8XY56 (EMBL:AL646067) (173 aa) fasta scores: E(): 3.9e-09, 50.6% id in 83 aa.
       0.613
ECA3711
Conserved hypothetical phage-related protein; Similar to many proteins described as nucleoid-associated proteins e.g. Escherichia coli nucleoid-associated protein NdpA or b2186 SWALL:NDPA_ECOLI (SWALL:P33920) (334 aa) fasta scores: E(): 1.7e-18, 28.22% id in 333 aa. Also similar to many others e.g. Ralstonia oxalatica hypothetical protein SWALL:CAD61113 (EMBL:AJ536756) (340 aa) fasta scores: E(): 8.2e-41, 38.34% id in 326 aa; Similar to, and to Pseudomonas resinovorans hypothetical protein or93 SWALL:BAC41613 (EMBL:AB088420) (333 aa) fasta scores: E(): 1.9e-30, 30.12% id in 332 aa.
       0.503
ECA3712
Putative phage-related membrane protein; Similar to Ralstonia oxalatica hypothetical protein SWALL:CAD61111 (EMBL:AJ536756) (391 aa) fasta scores: E(): 1.4e-33, 33.43% id in 332 aa.
       0.503
ECA3707
Putative phage-related DNA-binding protein; Similar to Neisseria meningitidis hypothetical protein Nmb1004 SWALL:Q9JZL2 (EMBL:AE002451) (81 aa) fasta scores: E(): 5.8e-07, 48.21% id in 56 aa, and to Xanthomonas campestris hypothetical protein Xcc2998 SWALL:Q8P6H1 (EMBL:AE012413) (84 aa) fasta scores: E(): 0.01, 36.06% id in 61 aa.
       0.444
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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