STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3731Phage-related protein; Similar to Bacteriophage N15 gp56 gene 56 SWALL:O64364 (EMBL:AF064539) (67 aa) fasta scores: E(): 2.6e-10, 61.29% id in 62 aa. (66 aa)    
Predicted Functional Partners:
ECA3725
Similar to Salmonella typhi putative membrane protein sty1621 SWALL:Q8Z6U5 (EMBL:AL627270) (112 aa) fasta scores: E(): 2.5e-24, 75% id in 112 aa.
       0.773
ECA3726
Putative phage-related protein; Similar to Bacteriophage Mu protein Gp36 SWALL:VG36_BPMU (SWALL:Q9T1V9) (141 aa) fasta scores: E(): 0.0025, 26.02% id in 146 aa and to Salmonella typhi phage-related protein Sty1622 SWALL:Q8Z6U4 (EMBL:AL627270) (148 aa) fasta scores: E(): 4.4e-43, 75.67% id in 148 aa.
       0.773
ECA3727
Conserved phage-related protein; Similar to Salmonella typhi hypothetical protein Sty1623 SWALL:Q8Z6U3 (EMBL:AL627270) (154 aa) fasta scores: E(): 4.2e-46, 71.42% id in 154 aa, and to Salmonella typhimurium putative cytoplasmic protein stm4215 SWALL:Q8ZKJ0 (EMBL:AE008897) (151 aa) fasta scores: E(): 8e-13, 32.9% id in 155 aa.
       0.773
ECA3728
Conserved phage-related protein; Similar to Salmonella typhi hypothetical protein Sty1624 SWALL:Q8Z6U2 (EMBL:AL627270) (84 aa) fasta scores: E(): 1.7e-13, 56.79% id in 81 aa, and to Salmonella typhimurium putative cytoplasmic protein stm4214 SWALL:Q8ZKJ1 (EMBL:AE008897) (65 aa) fasta scores: E(): 3.9e-09, 65.21% id in 46 aa.
       0.773
ECA3729
Similar to Bacteriophage P2 major tail sheath protein fI SWALL:VPF1_BPP2 (SWALL:P22501) (395 aa) fasta scores: E(): 2.4e-19, 30.27% id in 403 aa and to Erwinia carotovora tail sheath protein SWALL:Q9WX99 (EMBL:AB017338) (475 aa) fasta scores: E(): 3.5e-154, 81.05% id in 475 aa.
       0.773
ECA3730
Similar to Bacteriophage P2 major tail tube protein FII SWALL:VPF2_BPP2 (SWALL:P22502) (171 aa) fasta scores: E(): 4e-09, 28.65% id in 164 aa and to Erwinia carotovora tail core protein SWALL:Q9WXA0 (EMBL:AB017338) (174 aa) fasta scores: E(): 2.2e-60, 82.75% id in 174 aa.
       0.773
ECA3724
Conserved phage-related protein; Similar to Salmonella typhi hypothetical protein Sty1620 SWALL:Q8Z6U6 (EMBL:AL627270) (317 aa) fasta scores: E(): 1.3e-89, 75.07% id in 317 aa.
       0.757
ECA3723
Conserved phage-related protein; Similar to Salmonella typhi hypothetical protein Sty1619 SWALL:Q8Z6U7 (EMBL:AL627270) (371 aa) fasta scores: E(): 9.8e-89, 64.67% id in 368 aa.
       0.638
ECA3731A
Putative phage-related protein; Similar to Salmonella typhi hypothetical protein t1360 SWALL:AAO69005 (EMBL:AE016838) (111 aa) fasta scores: E(): 1.7e-20, 62.5% id in 96 aa, and to Pectobacterium carotovorum subsp. carotovorum carotovorum orf1, orf2, orf4-12 genes, bacteriocin SWALL:Q9KW60 (EMBL:AB045036) (106 aa) fasta scores: E(): 4.7e-17, 53.12% id in 96 aa.
       0.483
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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