STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3740Similar to the N-terminus of Bacteriophage P2 tail protein I SWALL:VPI_BPP2 (SWALL:P26701) (176 aa) fasta scores: E(): 5.5, 29.29% id in 99 aa. Also hhighly similar to Erwinia carotovora tail fiber SWALL:Q9WXA4 (EMBL:AB017338) (182 aa) fasta scores: E(): 3.8e-31, 59.15% id in 142 aa. (191 aa)    
Predicted Functional Partners:
ECA3738
Similar to Bacteriophage P2 baseplate assembly protein w W SWALL:VPW_BPP2 (SWALL:P51768) (115 aa) fasta scores: E(): 0.0098, 36.78% id in 87 aa and Erwinia carotovora, and Pectobacterium carotovorum subsp. carotovorum baseplate SWALL:Q9WXA2 (EMBL:AB017338) (115 aa) fasta scores: E(): 7.1e-37, 75.65% id in 115 aa.
 
 
 0.985
ECA3739
Similar to Bacteriophage P2 baseplate assembly protein J SWALL:VPJ_BPP2 (SWALL:P51767) (302 aa) fasta scores: E(): 3.7e-13, 36.89% id in 187 aa and Pectobacterium carotovorum subsp. carotovorum baseplate SWALL:Q9KW55 (EMBL:AB045036) (367 aa) fasta scores: E(): 7.3e-87, 65.39% id in 367 aa.
 
 
 0.984
ECA3733
Putative phage-related protein; Similar to Pectobacterium carotovorum subsp. carotovorum carotovorum orf1, orf2, orf4-12 genes, bacteriocin SWALL:Q9KW58 (EMBL:AB045036) (309 aa) fasta scores: E(): 1.8e-50, 53.79% id in 303 aa, and to Salmonella typhi hypothetical protein Sty1630 SWALL:Q8Z6T6 (EMBL:AL627270) (294 aa) fasta scores: E(): 1.1e-68, 65.41% id in 292 aa.
 
 
 0.968
ECA3735
Putative bacteriophage protein; Similar to Bacteriophage P2 GpD SWALL:VPD_BPP2 (SWALL:P10312) (387 aa) fasta scores: E(): 7.1e-11, 24.45% id in 364 aa and to Salmonella typhi putative protein sty1632 SWALL:Q8Z6T4 (EMBL:AL627270) (384 aa) fasta scores: E(): 4.1e-106, 76.44% id in 382 aa.
 
  
 0.955
ECA3736
Similar to Bacteriophage P2 baseplate assembly protein V SWALL:VPV_BPP2 (SWALL:P31340) (211 aa) fasta scores: E(): 3.6e-07, 28.27% id in 191 aa and Pectobacterium carotovorum subsp. carotovorum tail spike SWALL:Q9KW56 (EMBL:AB045036) (193 aa) fasta scores: E(): 5.4e-47, 64.46% id in 197 aa.
 
  
 0.953
ECA3730
Similar to Bacteriophage P2 major tail tube protein FII SWALL:VPF2_BPP2 (SWALL:P22502) (171 aa) fasta scores: E(): 4e-09, 28.65% id in 164 aa and to Erwinia carotovora tail core protein SWALL:Q9WXA0 (EMBL:AB017338) (174 aa) fasta scores: E(): 2.2e-60, 82.75% id in 174 aa.
 
 
 0.943
ECA3729
Similar to Bacteriophage P2 major tail sheath protein fI SWALL:VPF1_BPP2 (SWALL:P22501) (395 aa) fasta scores: E(): 2.4e-19, 30.27% id in 403 aa and to Erwinia carotovora tail sheath protein SWALL:Q9WX99 (EMBL:AB017338) (475 aa) fasta scores: E(): 3.5e-154, 81.05% id in 475 aa.
 
 
 0.942
ECA3741
Putative bacteriophage tail fiber protein; Similar to Pectobacterium carotovorum subsp. carotovorum tail fiber SWALL:Q9KW53 (EMBL:AB045036) (632 aa) fasta scores: E(): 4.4e-66, 75.76% id in 260 aa, and to Salmonella typhi bacteriophage tail fiber protein sty1637 SWALL:Q8Z6S9 (EMBL:AL627270) (341 aa) fasta scores: E(): 2.1e-29, 35.8% id in 539 aa, and to Bacteriophage HK97 tail fiber stF SWALL:Q9MCR6 (EMBL:AF069529) (321 aa) fasta scores: E(): 3.1e-27, 39.74% id in 317 aa.
 
    0.931
ECA2773
Bacteriophage tail sheath protein (partial); Similar to the N-terminal regions of many including Erwinia carotovora tail sheath protein SWALL:Q9WX99 (EMBL:AB017338) (475 aa) fasta scores: E(): 1.1e-10, 87.23% id in 47 aa, and to Pectobacterium carotovorum subsp. carotovorum tail sheath protein SWALL:Q9KW62 (EMBL:AB045036) (475 aa) fasta scores: E(): 1.1e-10, 87.23% id in 47 aa.
 
 
 0.927
ECA3732
Similar to Salmonella typhi putative bacteriophage protein sty1629 SWALL:Q8Z6T7 (EMBL:AL627270) (821 aa) fasta scores: E(): 1.4e-195, 66.22% id in 823 aa, and to Pectobacterium carotovorum subsp. carotovorum tail protein SWALL:Q9KW59 (EMBL:AB045036) (835 aa) fasta scores: E(): 3.9e-67, 32.94% id in 853 aa.
 
     0.886
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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