Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ECA3750Similar to Agrobacterium tumefaciens hypothetical protein atu4562 or agr_l_617 SWALL:Q8U792 (EMBL:AE009384) (840 aa) fasta scores: E(): 4e-114, 38.74% id in 826 aa. (820 aa)    
Predicted Functional Partners:
ECA3749
Similar to Erwinia chrysanthemi RhiN protein RhiN SWALL:CAC83616 (EMBL:AJ292045) (379 aa) fasta scores: E(): 1.8e-53, 45.01% id in 311 aa, and to Agrobacterium tumefaciens hypothetical protein atu4561 atu4561 or agr_l_618 SWALL:Q8U793 (EMBL:AE009384) (397 aa) fasta scores: E(): 4.9e-74, 53.46% id in 361 aa. Also similar to ECA3559 (RhiN) (43.810% id. in 315 aa overlap).
 
   
 0.901
ECA3748
Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu4559 or agr_l_621 SWALL:Q8U795 (EMBL:AE009384) (368 aa) fasta scores: E(): 1e-75, 60.05% id in 363 aa, and to Rhizobium meliloti putative ATP-binding ABC transporter protein r00112 or smc04140 SWALL:Q92T68 (EMBL:AL591782) (360 aa) fasta scores: E(): 1.3e-69, 59.15% id in 355 aa.
       0.776
ECA3746
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4557 or agr_l_624 SWALL:Q8U797 (EMBL:AE009383) (349 aa) fasta scores: E(): 2.9e-96, 69.42% id in 350 aa, and to Thermoanaerobacter tengcongensis sugar permeases malg4 or tte1936 SWALL:Q8R8Q9 (EMBL:AE013144) (275 aa) fasta scores: E(): 1.5e-45, 39.93% id in 328 aa.
 
     0.772
ECA3747
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4558 or agr_l_623 SWALL:Q8U796 (EMBL:AE009384) (352 aa) fasta scores: E(): 6.2e-82, 63.09% id in 317 aa, and to Thermoanaerobacter tengcongensis ABC-type sugar transport systems, permease components malf4 or tte1937 SWALL:Q8R8Q8 (EMBL:AE013144) (294 aa) fasta scores: E(): 5e-30, 37.62% id in 295 aa.
 
   
 0.758
ECA3751
Extracellular solute-binding protein; Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu4564 or agr_l_615 SWALL:Q8U790 (EMBL:AE009384) (428 aa) fasta scores: E(): 2.3e-71, 45.07% id in 426 aa, and to Thermoanaerobacter tengcongensis sugar-binding periplasmic proteins/domains ugpb4 or tte1938 SWALL:Q8R8Q7 (EMBL:AE013144) (438 aa) fasta scores: E(): 7.8e-17, 24.81% id in 403 aa.
 
     0.742
ECA3745
Similar to Agrobacterium tumefaciens transcriptional regulator, LacI family PurR or atu4556 or agr_l_625 SWALL:Q8U798 (EMBL:AE009383) (353 aa) fasta scores: E(): 2.3e-43, 39.23% id in 339 aa, and to Sphingomonas sp transcriptional regulator CcpA SWALL:Q9KWU0 (EMBL:AB011415) (353 aa) fasta scores: E(): 5.6e-26, 32.75% id in 345 aa.
       0.715
ftsK
Similar to Escherichia coli cell division protein FtsK or b0890 SWALL:FTSK_ECOLI (SWALL:P46889) (1329 aa) fasta scores: E(): 3.8e-163, 53.6% id in 1347 aa.
   
 
 0.713
ECA0980
Autotransporter; Similar to Pseudomonas fluorescens serine protease homologue PspB SWALL:Q9ZNI5 (EMBL:AB015053) (1036 aa) fasta scores: E(): 1.6e-25, 28.66% id in 1106 aa, and to Serratia marcescens extracellular serine protease precursor SWALL:PRTT_SERMA (SWALL:P29805) (1045 aa) fasta scores: E(): 1.1e-16, 25.6% id in 1082 aa.
  
 0.667
btuB
Vitamin B12 receptor precursor; Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans- periplasmic membrane protein TonB; Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily.
    
   0.640
ECA3266
Similar to Ralstonia solanacearum putative hemagglutinin/hemolysin-related protein rsp1180 or rs05070 SWALL:Q8XQP2 (EMBL:AL646083) (4106 aa) fasta scores: E(): 3.1e-134, 29.53% id in 4320 aa, and to Aeromonas salmonicida Rtx protein Asx SWALL:Q9L800 (EMBL:AF218037) (2747 aa) fasta scores: E(): 1.3e-47, 28.2% id in 2822 aa.
  
 0.600
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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