STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3751Extracellular solute-binding protein; Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu4564 or agr_l_615 SWALL:Q8U790 (EMBL:AE009384) (428 aa) fasta scores: E(): 2.3e-71, 45.07% id in 426 aa, and to Thermoanaerobacter tengcongensis sugar-binding periplasmic proteins/domains ugpb4 or tte1938 SWALL:Q8R8Q7 (EMBL:AE013144) (438 aa) fasta scores: E(): 7.8e-17, 24.81% id in 403 aa. (435 aa)    
Predicted Functional Partners:
ECA3746
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4557 or agr_l_624 SWALL:Q8U797 (EMBL:AE009383) (349 aa) fasta scores: E(): 2.9e-96, 69.42% id in 350 aa, and to Thermoanaerobacter tengcongensis sugar permeases malg4 or tte1936 SWALL:Q8R8Q9 (EMBL:AE013144) (275 aa) fasta scores: E(): 1.5e-45, 39.93% id in 328 aa.
 
 0.998
ECA3747
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4558 or agr_l_623 SWALL:Q8U796 (EMBL:AE009384) (352 aa) fasta scores: E(): 6.2e-82, 63.09% id in 317 aa, and to Thermoanaerobacter tengcongensis ABC-type sugar transport systems, permease components malf4 or tte1937 SWALL:Q8R8Q8 (EMBL:AE013144) (294 aa) fasta scores: E(): 5e-30, 37.62% id in 295 aa.
 
 0.982
ECA3752
Hypothetical protein; Similar to the C-terminal regions of several including Vibrio cholerae hypothetical protein Vc0614 vc0614 SWALL:Q9KUA9 (EMBL:AE004147) (325 aa) fasta scores: E(): 8.8e-12, 31.97% id in 147 aa, and to Vibrio vulnificus predicted N-acetylglucosamine kinase vv11667 SWALL:AAO10084 (EMBL:AE016802) (296 aa) fasta scores: E(): 9.7e-09, 27.66% id in 141 aa.
  
    0.777
ECA3753
Similar to Vibrio cholerae hypothetical protein Vc0614 SWALL:Q9KUA9 (EMBL:AE004147) (325 aa) fasta scores: E(): 2.6e-27, 40.66% id in 300 aa, and to Vibrio vulnificus predicted N-acetylglucosamine kinase vv11667 SWALL:AAO10084 (EMBL:AE016802) (296 aa) fasta scores: E(): 7.6e-29, 40.66% id in 300 aa.
  
    0.777
togM
Binding-protein-dependent transport system, inner membrane component; Similar to Erwinia chrysanthemi inner membrane protein TogM SWALL:Q93KC0 (EMBL:AJ305144) (296 aa) fasta scores: E(): 1.2e-115, 97.63% id in 296 aa.
 
 0.760
ECA3750
Similar to Agrobacterium tumefaciens hypothetical protein atu4562 or agr_l_617 SWALL:Q8U792 (EMBL:AE009384) (840 aa) fasta scores: E(): 4e-114, 38.74% id in 826 aa.
 
     0.742
ECA0850
Putative sugar ABC transporter, permease protein; Similar to Agrobacterium radiobacter lactose transport system permease protein LacG SWALL:LACG_AGRRD (SWALL:P29824) (273 aa) fasta scores: E(): 6.5e-66, 57.46% id in 268 aa, and to Bacillus subtilis L-arabinose transport system permease protein AraQ SWALL:ARAQ_BACSU (SWALL:P94530) (281 aa) fasta scores: E(): 1e-30, 33.94% id in 271 aa.
 
 0.723
ECA0849
Putative sugar ABC transporter, permease protein; Similar to Agrobacterium radiobacter lactose transport system permease protein LacF SWALL:LACF_AGRRD (SWALL:P29823) (298 aa) fasta scores: E(): 1.2e-73, 62.54% id in 291 aa, and to Rhizobium meliloti probable lactose uptake ABC transporter permease protein LacF or rb0002 or smb21653 SWALL:Q92XF9 (EMBL:AL603642) (298 aa) fasta scores: E(): 2.1e-74, 65.27% id in 288 aa.
 
 0.719
togN
Binding-protein-dependent transport system, inner membrane component; Similar to Erwinia chrysanthemi inner membrane protein TogN SWALL:Q93KB9 (EMBL:AJ305144) (300 aa) fasta scores: E(): 1.7e-108, 90.03% id in 301 aa.
 
 0.701
ECA3754
Putative calcineurin-like phosphoesterase; Similar to Rhizobium meliloti hypothetical protein rb0152 rb0152 or smb20152 SWALL:Q92X10 (EMBL:AL603642) (572 aa) fasta scores: E(): 9.3e-70, 36.77% id in 552 aa, and to Agrobacterium tumefaciens hypothetical protein atu4354 atu4354 or agr_l_1025 SWALL:Q8U7U5 (EMBL:AE009364) (557 aa) fasta scores: E(): 1.9e-63, 36.85% id in 521 aa.
       0.693
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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