STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3752Hypothetical protein; Similar to the C-terminal regions of several including Vibrio cholerae hypothetical protein Vc0614 vc0614 SWALL:Q9KUA9 (EMBL:AE004147) (325 aa) fasta scores: E(): 8.8e-12, 31.97% id in 147 aa, and to Vibrio vulnificus predicted N-acetylglucosamine kinase vv11667 SWALL:AAO10084 (EMBL:AE016802) (296 aa) fasta scores: E(): 9.7e-09, 27.66% id in 141 aa. (183 aa)    
Predicted Functional Partners:
ECA3753
Similar to Vibrio cholerae hypothetical protein Vc0614 SWALL:Q9KUA9 (EMBL:AE004147) (325 aa) fasta scores: E(): 2.6e-27, 40.66% id in 300 aa, and to Vibrio vulnificus predicted N-acetylglucosamine kinase vv11667 SWALL:AAO10084 (EMBL:AE016802) (296 aa) fasta scores: E(): 7.6e-29, 40.66% id in 300 aa.
 
  
 
0.982
nagA
N-acetylglucosamine-6-phosphate deacetylase; Similar to Escherichia coli, and Escherichia coli O157:H7 N-acetylglucosamine-6-phosphate deacetylase NagA or b0677 or z0824 or ecs0707 SWALL:NAGA_ECOLI (SWALL:P15300) (382 aa) fasta scores: E(): 1.7e-109, 72.55% id in 379 aa.
 
  
 0.935
glmS
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
  
 
 0.924
nagB
Glucosamine-6-phosphate isomerase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
  
 
 0.923
mrsA
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
   
 
 0.909
ECA3751
Extracellular solute-binding protein; Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu4564 or agr_l_615 SWALL:Q8U790 (EMBL:AE009384) (428 aa) fasta scores: E(): 2.3e-71, 45.07% id in 426 aa, and to Thermoanaerobacter tengcongensis sugar-binding periplasmic proteins/domains ugpb4 or tte1938 SWALL:Q8R8Q7 (EMBL:AE013144) (438 aa) fasta scores: E(): 7.8e-17, 24.81% id in 403 aa.
  
    0.779
ECA3754
Putative calcineurin-like phosphoesterase; Similar to Rhizobium meliloti hypothetical protein rb0152 rb0152 or smb20152 SWALL:Q92X10 (EMBL:AL603642) (572 aa) fasta scores: E(): 9.3e-70, 36.77% id in 552 aa, and to Agrobacterium tumefaciens hypothetical protein atu4354 atu4354 or agr_l_1025 SWALL:Q8U7U5 (EMBL:AE009364) (557 aa) fasta scores: E(): 1.9e-63, 36.85% id in 521 aa.
       0.689
ECA3431
Putative membrane protein; Similar to Photorhabdus luminescens Orf3 SWALL:AAN64195 (EMBL:AY144117) (447 aa) fasta scores: E(): 4e-30, 33.47% id in 469 aa, and to Escherichia coli O157:H7 hypothetical protein z0249 z0249 or ecs0217 SWALL:Q8X7X1 (EMBL:AE005197) (499 aa) fasta scores: E(): 2e-25, 30.42% id in 470 aa.
  
     0.529
ECA1463
Putative carbohydrate kinase; Similar to Bacillus subtilis protein IolC or e83C SWALL:IOLC_BACSU (SWALL:P42414) (325 aa) fasta scores: E(): 1e-21, 31.64% id in 335 aa, and to Yersinia pestis putative carbohydrate kinase ypo2585 or y1153 SWALL:Q8ZDI3 (EMBL:AJ414152) (656 aa) fasta scores: E(): 3.8e-208, 78.44% id in 631 aa.
  
   
 0.490
ECA1455
Similar to Salmonella typhimurium putative transcriptional regulator stm4417 SWALL:Q8ZK65 (EMBL:AE008907) (277 aa) fasta scores: E(): 1.2e-62, 65.29% id in 268 aa, and to Yersinia pestis hypothetical protein ypo2576 or y1145 SWALL:Q8ZDJ0 (EMBL:AJ414152) (284 aa) fasta scores: E(): 4.3e-82, 79.93% id in 284 aa.
 
     0.448
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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