STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3774Similar to Escherichia coli O6 hypothetical protein c0335 SWALL:AAN78823 (EMBL:AE016756) (95 aa) fasta scores: E(): 3.1e-25, 84.21% id in 95 aa, and to Yersinia pestis hypothetical y1617 SWALL:AAM85186 (EMBL:AE013764) (70 aa) fasta scores: E(): 5.6e-15, 81.81% id in 66 aa. (95 aa)    
Predicted Functional Partners:
ECA3775
Similar to Yersinia pestis putative membrane protein ypo2782 or y1615 SWALL:Q8ZD11 (EMBL:AJ414153) (418 aa) fasta scores: E(): 1.1e-135, 85.91% id in 419 aa, and to Escherichia coli O6 putative integral membrane protein c0334 SWALL:AAN78822 (EMBL:AE016756) (418 aa) fasta scores: E(): 4.6e-135, 85.91% id in 419 aa.
 
 
 0.995
sgcA
Similar to Escherichia coli putative phosphotransferase enzyme iII, A component SgcA or b4302 SWALL:SGCA_ECOLI (SWALL:P39363) (143 aa) fasta scores: E(): 9.4e-18, 40% id in 135 aa, and to Yersinia pestis phosphotransferase enzyme ii, a component ypo2569 or y1618 SWALL:Q8ZDJ3 (EMBL:AJ414152) (147 aa) fasta scores: E(): 1.3e-39, 71.42% id in 147 aa.
 
 
 0.994
ECA2354
Putative membrane protein; Similar to Salmonella typhimurium putative inner membrane protein stm2342 SWALL:Q8ZND3 (EMBL:AE008805) (463 aa) fasta scores: E(): 2.2e-69, 44.27% id in 445 aa, and to Staphylococcus aureus Mw0306 protein mw0306 SWALL:Q8NYB3 (EMBL:AP004823) (448 aa) fasta scores: E(): 1.1e-68, 45.57% id in 441 aa.
 
 
 0.984
ECA2356
Putative sugar phosphotransferase enzyme IIa component; Similar to Escherichia coli, and Escherichia coli O157:H7 unknown pentitol phosphotransferase enzyme ii, a component sgaa or b4195 or z5804 or ecs5171 SWALL:PTXA_ECOLI (SWALL:P39303) (154 aa) fasta scores: E(): 2.3e-15, 34.01% id in 147 aa, and to Salmonella typhimurium putative PTS enzyme iisga subunit ptxa or stm4385 SWALL:Q8ZK88 (EMBL:AE008905) (154 aa) fasta scores: E(): 9e-16, 34.69% id in 147 aa.
 
 
 0.981
ECA2353
Putative exported protein; Similar to Listeria monocytogenes hypothetical protein Lmo2650 SWALL:Q8Y425 (EMBL:AL591984) (90 aa) fasta scores: E(): 5e-08, 35.1% id in 94 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein stm2343 or sty2573 SWALL:Q8XG32 (EMBL:AE008805) (90 aa) fasta scores: E(): 7.8e-08, 42.85% id in 91 aa.
  
  
 
0.917
ptsH
PTS system phosphocarrier protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri phosphocarrier protein Hpr or b2415 or c2950 or z3681 or ecs3287 or stm2431 or sty2667 or t0426 or sf2470 SWALL:PTHP_ECOLI (SWALL:P07006) (85 aa) fasta scores: E(): 1e-27, 97.64% id in 85 aa.
    
  0.903
ECA0343
Probable PTS system regulatory protein; Similar to Escherichia coli O6 putative transcriptional antiterminator c4488 SWALL:AAN82924 (EMBL:AE016769) (532 aa) fasta scores: E(): 1.5e-115, 59.37% id in 512 aa, and to Bacillus stearothermophilus MtlR protein SWALL:Q45419 (EMBL:U18943) (697 aa) fasta scores: E(): 3.1e-30, 25% id in 508 aa.
 
  
 0.651
fsaB
Fructose-6-phosphate aldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
    0.608
mtlA
Similar to Escherichia coli PTS system, mannitol-specific IIabc component MtlA or b3599 SWALL:PTMA_ECOLI (SWALL:P00550) (637 aa) fasta scores: E(): 1.1e-188, 81.63% id in 637 aa.
 
  
 0.554
ECA3772
Similar to Yersinia pestis LacI-family transcriptional regulatory protein ypo2568 SWALL:Q8ZDJ4 (EMBL:AJ414152) (344 aa) fasta scores: E(): 4.7e-70, 54.46% id in 336 aa, and to Escherichia coli O6 putative conserved protein c0337 SWALL:AAN78825 (EMBL:AE016756) (343 aa) fasta scores: E(): 1.6e-67, 56.45% id in 310 aa.
 
     0.452
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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