STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ampDanhydro-N-acetylmuramyl-tripeptide amidase; Similar to Escherichia coli ampd protein AmpD or b0110 SWALL:AMPD_ECOLI (SWALL:P13016) (183 aa) fasta scores: E(): 1.2e-51, 67.21% id in 183 aa, and to Enterobacter cloacae AmpD protein AmpD SWALL:AMPD_ENTCL (SWALL:P82973) (187 aa) fasta scores: E(): 5.9e-53, 69.1% id in 178 aa. (191 aa)    
Predicted Functional Partners:
ampE
Putative membrane-bound sensory transducer; Similar to Escherichia coli, and Shigella flexneri AmpE protein AmpE or b0111 or sf0108 SWALL:AMPE_ECOLI (SWALL:P13017) (284 aa) fasta scores: E(): 6.6e-77, 66.19% id in 284 aa.
  
  
 0.845
nagZ
Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
 
   
 0.449
ECA3341
Similar to Yersinia pestis hypothetical protein ypo1080 or y3096 SWALL:AAM86646 (EMBL:AJ414146) (239 aa) fasta scores: E(): 6.6e-62, 61.86% id in 236 aa, and to Salmonella typhimurium putative sam-dependent methyltransferase yafs or stm0262 SWALL:Q8ZRM1 (EMBL:AE008707) (240 aa) fasta scores: E(): 6.6e-60, 59.07% id in 237 aa.
 
   
 0.418
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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