STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppdDSimilar to Escherichia coli prepilin peptidase dependent protein D precursor PpdD or b0108 SWALL:PPDD_ECOLI (SWALL:P36647) (146 aa) fasta scores: E(): 2.8e-32, 60.69% id in 145 aa. (148 aa)    
Predicted Functional Partners:
hofB
Similar to Escherichia coli protein transport protein HofB or HopB or b0107 SWALL:HOFB_ECOLI (SWALL:P36645) (461 aa) fasta scores: E(): 3.2e-77, 51.06% id in 470 aa.
 
  
 0.924
hofC
Similar to Escherichia coli protein transport protein HofC or HopC or b0106 SWALL:HOFC_ECOLI (SWALL:P36646) (400 aa) fasta scores: E(): 5.6e-55, 40.15% id in 401 aa.
 
   
 0.924
hofQ
Putative type II secretion system protein; Similar to Escherichia coli protein transport protein HofQ precursor HofQ or HopQ or b3391 SWALL:HOFQ_ECOLI (SWALL:P34749) (412 aa) fasta scores: E(): 3.1e-71, 52.3% id in 390 aa, and to Yersinia pestis putative membrane transport protein ypo0150 or hofq or y3932 SWALL:Q8ZJF8 (EMBL:AJ414141) (374 aa) fasta scores: E(): 3.9e-84, 62.89% id in 380 aa.
 
   
 0.722
ECA3218
Similar to Yersinia pestis putative membrane protein ypo2877 or y1355 SWALL:Q8ZCT7 (EMBL:AJ414154) (211 aa) fasta scores: E(): 3.2e-42, 61.13% id in 211 aa, and to Escherichia coli O6 hypothetical protein yfgm or c3035 SWALL:AAN81485 (EMBL:AE016764) (206 aa) fasta scores: E(): 1.8e-40, 57.56% id in 205 aa.
  
     0.711
ECA0460
Similar to Yersinia pestis hypothetical protein ypo0911 SWALL:Y911_YERPE (SWALL:Q8ZHI2) (192 aa) fasta scores: E(): 1.2e-49, 70.76% id in 195 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YgfB SWALL:YGFB_ECOLI (SWALL:P25533) (192 aa) fasta scores: E(): 4.4e-49, 70.25% id in 195 aa; Belongs to the UPF0149 family.
  
     0.689
ppdA
Similar to Escherichia coli prepilin peptidase dependent protein A precursor PpdA or b2826 SWALL:PPDA_ECOLI (SWALL:P33554) (156 aa) fasta scores: E(): 5.2e-19, 40% id in 150 aa, and to Salmonella typhimurium prepilin peptidase dependent protein a, putative component in type IVpilin biogenesis ppda or stm3000 SWALL:Q8ZMB0 (EMBL:AE008837) (156 aa) fasta scores: E(): 2.7e-20, 39.35% id in 155 aa.
 
 
 0.673
pilQ
Putative Type IV pilus nucleotide-binding protein; Similar to Escherichia coli, and Salmonella typhimurium nucleotide-binding protein PilQ SWALL:O07375 (EMBL:AB021078) (517 aa) fasta scores: E(): 2.7e-42, 32.67% id in 508 aa, and to Yersinia pseudotuberculosis nucleotide-binding protein PilQ SWALL:Q8KR27 (EMBL:AY047316) (517 aa) fasta scores: E(): 4.4e-46, 33.99% id in 506 aa.
  
  
 0.612
outO
Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.551
mltB
Similar to Escherichia coli membrane-bound lytic murein transglycosylase B precursor MltB or b2701 SWALL:MLTB_ECOLI (SWALL:P41052) (361 aa) fasta scores: E(): 5.7e-106, 75.06% id in 357 aa.
 
     0.547
nadC
Similar to Escherichia coli nicotinate-nucleotide pyrophosphorylase [carboxylating] NadC or b0109 SWALL:NADC_ECOLI (SWALL:P30011) (296 aa) fasta scores: E(): 8.2e-73, 68.94% id in 293 aa; Belongs to the NadC/ModD family.
  
    0.528
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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