STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alaEPutative membrane protein; Exports L-alanine; Belongs to the AlaE exporter family. (145 aa)    
Predicted Functional Partners:
pgpB
Phosphatidylglycerophosphatase B; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri phosphatidylglycerophosphatase B PgpB or b1278 or z2529 or ecs1851 or sf1282 SWALL:PGPB_ECOLI (SWALL:P18201) (254 aa) fasta scores: E(): 6.1e-68, 61.75% id in 251 aa.
  
   
 0.715
ECA2630
Phage-related protein; Similar to Salmonella typhimurium phage ST64B Sb30 SWALL:AAL25908 (EMBL:AY055382) (189 aa) fasta scores: E(): 1e-30, 50% id in 186 aa, and in parts to many other Bacteriophage exodeoxyribonuclease. e.g. Bacteriophage T4 DexA SWALL:EXOD_BPT4 (SWALL:P04536) (227 aa) fasta scores: E(): 0.00055, 26.19% id in 210 aa and to the C-terminal region of Escherichia coli O157:H7 putative exonuclease VIII, ds DNA exonuclease, 5'--> 3' specific encoded by prophage CP-933o exoo or z2037 or ecs1759 SWALL:Q8X287 (EMBL:AE005343) (823 aa) fasta scores: E(): 1.2e-27, 44.44% id in 189 aa.
  
     0.694
ECA2472
Putative exported protein; Similar to Escherichia coli, and Shigella flexneri hypothetical protein yeby precursor yeby or b1839 or sf1850 SWALL:YEBY_ECOLI (SWALL:P76277) (113 aa) fasta scores: E(): 7.8e-23, 56.63% id in 113 aa, and to Yersinia pestis putative exported protein ypo1786 or y2521 SWALL:Q8ZFC8 (EMBL:AJ414150) (118 aa) fasta scores: E(): 1.1e-22, 57.14% id in 112 aa.
  
     0.689
ECA3521
Similar to Escherichia coli O6 hypothetical protein yfim or c3111 SWALL:Q8FF03 (EMBL:AE016764) (114 aa) fasta scores: E(): 3.8e-26, 56.36% id in 110 aa, and to Salmonella typhi hypothetical protein yfim or t0257 SWALL:AAO67983 (EMBL:AE016834) (107 aa) fasta scores: E(): 3.3e-25, 60% id in 105 aa.
  
     0.679
ECA1071
Conserved hypothetical protein; Similar to Escherichia coli O157:H7 orf, hypothetical protein z4045 or ecs3591 SWALL:Q8X7Z8 (EMBL:AE005501) (78 aa) fasta scores: E(): 7.7e-25, 81.33% id in 75 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein stm2923 or sty3048 SWALL:Q8XEM2 (EMBL:AE008833) (78 aa) fasta scores: E(): 2.1e-24, 78.66% id in 75 aa.
  
     0.670
mtlR
Mannitol operon repressor; Similar to Escherichia coli, and Escherichia coli O6 mannitol operon repressor MtlR or b3601 or c4418 SWALL:MTLR_ECOLI (SWALL:P36563) (195 aa) fasta scores: E(): 2.6e-47, 74.15% id in 178 aa.
  
     0.652
ECA3600
Similar to Yersinia pestis putative exported protein ypo3528 SWALL:Q8ZB91 (EMBL:AJ414157) (187 aa) fasta scores: E(): 2.2e-43, 64.76% id in 193 aa, and to Salmonella typhimurium putative transcriptional regulator ytfj or stm4405 SWALL:Q8ZK73 (EMBL:AE008906) (185 aa) fasta scores: E(): 2.7e-42, 68.42% id in 171 aa.
  
     0.616
ECA0648
Similar to Yersinia pestis putative membrane protein ypo0582 or y3597 SWALL:AAM87145 (EMBL:AJ414143) (176 aa) fasta scores: E(): 3.4e-49, 73.86% id in 176 aa, and to Escherichia coli hypothetical protein ygjv ygjv or b3090 SWALL:YGJV_ECOLI (SWALL:P42603) (183 aa) fasta scores: E(): 1.2e-47, 67.81% id in 174 aa.
  
     0.606
aaeB
Putative membrane protein; Forms an efflux pump with AaeA. Could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell; Belongs to the aromatic acid exporter ArAE (TC 2.A.85) family.
  
     0.584
cutF
Similar to Escherichia coli copper homeostasis protein CutF precursor or NlpE or b0192 SWALL:CUTF_ECOLI (SWALL:P40710) (236 aa) fasta scores: E(): 8.9e-40, 49.55% id in 224 aa, and to Yersinia pestis putative copper homeostasis lipoprotein CutF or ypo1067 or y3110 SWALL:AAM86660 (EMBL:AJ414146) (242 aa) fasta scores: E(): 1.5e-46, 53.71% id in 229 aa.
  
     0.584
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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