STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3835Putative membrane protein; Similar to Pseudomonas putida conserved hypothetical protein pp2384 SWALL:AAN67997 (EMBL:AE016783) (104 aa) fasta scores: E(): 8.6e-14, 40.77% id in 103 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2038 SWALL:Q9I277 (EMBL:AE004630) (104 aa) fasta scores: E(): 1.9e-13, 42.85% id in 98 aa. (103 aa)    
Predicted Functional Partners:
ECA3836
Putative membrane protein; Similar to Pseudomonas putida branched-chain amino acid transport protein AzlC or pp2385 SWALL:AAN67998 (EMBL:AE016783) (230 aa) fasta scores: E(): 3e-36, 47.36% id in 209 aa, and to Vibrio cholerae AzlC family protein vca1002 SWALL:Q9KKU8 (EMBL:AE004427) (239 aa) fasta scores: E(): 1.2e-34, 44.79% id in 221 aa.
 
  
 0.958
ECA3837
AraC-family transcriptional regulator; Similar to Vibrio vulnificus AraC-type DNA-binding domain-containing protein vv20572 SWALL:AAO07518 (EMBL:AE016810) (276 aa) fasta scores: E(): 4.1e-52, 48.36% id in 275 aa, and to Vibrio cholerae transcriptional regulator, AraC/XylS family vca1001 SWALL:Q9KKU9 (EMBL:AE004427) (277 aa) fasta scores: E(): 3.6e-50, 50% id in 270 aa.
 
     0.747
ECA3509
Similar to Yersinia pestis putative amino acid transporter ypo3264 or y0925 SWALL:Q8ZBX0 (EMBL:AJ414156) (257 aa) fasta scores: E(): 1.6e-68, 75.86% id in 232 aa, and to Escherichia coli O157:H7 orf, hypothetical protein z3983 or ecs3544 SWALL:Q8X908 (EMBL:AE005497) (245 aa) fasta scores: E(): 8.5e-63, 71.3% id in 230 aa.
  
  
 0.630
ECA3700
Similar to Neisseria meningitidis hypothetical protein nma1871 or rth11 SWALL:Q9JRE4 (EMBL:AL162757) (203 aa) fasta scores: E(): 7e-29, 41% id in 200 aa, and to Shewanella oneidensis conserved hypothetical protein so0648 SWALL:AAN53726 (EMBL:AE015511) (208 aa) fasta scores: E(): 1.5e-21, 33.84% id in 195 aa.
  
     0.410
ECA1067
Similar to Chromobacterium violaceum hypothetical protein cv0650 SWALL:Q7P0B7 (EMBL:AE016912) (423 aa) fasta scores: E(): 1.3e-22, 38.4% id in 440 aa.
  
     0.407
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.