STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3847Similar to Butyrivibrio fibrisolvens xylosidase/arabinosidase [includes: beta-xylosidase; alpha-L-arabinofuranosidase] xylB SWALL:XYLB_BUTFI (SWALL:P45982) (517 aa) fasta scores: E(): 4.4e-13, 25.19% id in 520 aa, and to Xanthomonas campestris xylosidase/arabinosidase xcc0149 SWALL:Q8PE34 (EMBL:AE012110) (526 aa) fasta scores: E(): 3.3e-128, 58.97% id in 507 aa; Belongs to the glycosyl hydrolase 43 family. (540 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.888
pehA
Endo-polygalacturonase; Similar to Erwinia carotovora endo-polygalacturonase precursor PehA SWALL:PGL2_ERWCA (SWALL:P26509) (402 aa) fasta scores: E(): 1.4e-143, 97.76% id in 402 aa, and to Erwinia carotovora Peh precursor SWALL:Q9S5V7 (EMBL:AB022681) (402 aa) fasta scores: E(): 1.3e-140, 95.77% id in 402 aa; Belongs to the glycosyl hydrolase 28 family.
 
 
  0.866
uxaC
Uronate isomerase; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri uronate isomerase UxaC or b3092 or c3850 or sf3132 SWALL:UXAC_ECOLI (SWALL:P42607) (470 aa) fasta scores: E(): 8.6e-183, 89.33% id in 469 aa.
 
  
 0.849
pelZ
Pectate lyase; Similar to Erwinia chrysanthemi pectate lyase precursor PelZ SWALL:P94773 (EMBL:X97119) (420 aa) fasta scores: E(): 5.1e-120, 72.53% id in 426 aa.
 
   
 0.698
paeY
Similar to Erwinia chrysanthemi pectin acetylesterase PaeY SWALL:O32563 (EMBL:Y09828) (551 aa) fasta scores: E(): 8.8e-135, 61.07% id in 542 aa.
 
   
 0.642
pemA
Similar to Erwinia chrysanthemi pectinesterase a precursor PemA or Pem SWALL:PMEA_ERWCH (SWALL:P07863) (366 aa) fasta scores: E(): 3.5e-98, 70.47% id in 359 aa.
 
     0.634
ECA0852
Putative exported plant proteoglycan hydrolase; Similar to Pseudomonas fluorescens arabinogalactan endo-1,4-beta-galactosidase precursor gala or ganA SWALL:GANA_PSEFL (SWALL:P48841) (376 aa) fasta scores: E(): 1.2e-16, 33.53% id in 325 aa, and to Thermotoga maritima arabinogalactan endo-1,4-beta-galactosidase, putative tm1201 SWALL:Q9X0S8 (EMBL:AE001777) (606 aa) fasta scores: E(): 1.6e-33, 36.2% id in 348 aa, and to Aspergillus aculeatus arabinogalactan endo-1,4-beta-galactosidase precursor gal1 SWALL:GANA_ASPAC (SWALL:P48842) (350 aa) fasta scores: E(): 2.2e-15, 30.69% id in 329 aa.
  
   
 0.622
ECA3793
Putatuve glycosysl hydrolase; Similar to Streptomyces chartreusis alpha-L-arabinofuranosidase II precursor SWALL:ABF2_STRCX (SWALL:P82594) (328 aa) fasta scores: E(): 1e-65, 54.19% id in 286 aa, and to Salmonella typhi putatuve glycosysl hydrolase sty0170 SWALL:Q8Z9F3 (EMBL:AL627265) (316 aa) fasta scores: E(): 2.9e-102, 74.76% id in 313 aa; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.583
ECA4303
Putative exported protein; Similar to Streptomyces coelicolor hypothetical protein sco1536 or scl2.26C SWALL:Q9L273 (EMBL:AL939109) (822 aa) fasta scores: E(): 4e-150, 48.64% id in 847 aa, and to Bacillus subtilis YetA protein SWALL:O31530 (EMBL:Z99107) (857 aa) fasta scores: E(): 4.1e-50, 34.15% id in 887 aa.
  
  
 0.535
ECA3178
Similar to Pseudomonas fluorescens arabinogalactan endo-1,4-beta-galactosidase precursor GalA or GanA SWALL:GANA_PSEFL (SWALL:P48841) (376 aa) fasta scores: E(): 3.5e-35, 33.98% id in 409 aa, and to Yersinia pestis putative galactosidase ypo0853 or y3238 SWALL:Q8ZHN7 (EMBL:AJ414145) (400 aa) fasta scores: E(): 2.1e-117, 72.51% id in 393 aa.
  
   
 0.526
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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