STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3862Putative membrane protein; Similar to Pseudomonas putida conserved hypothetical protein pp3609 SWALL:Q88GV8 (EMBL:AE016787) (176 aa) fasta scores: E(): 2.2e-29, 50.93% id in 161 aa, and to Pseudomonas aeruginosa hypothetical protein Pa3320 SWALL:Q9HYS5 (EMBL:AE004754) (151 aa) fasta scores: E(): 1.7e-18, 46.37% id in 138 aa. (174 aa)    
Predicted Functional Partners:
ECA3863
Similar to Pseudomonas putida transcriptional regulator, LysR family pp3608 SWALL:AAN69208 (EMBL:AE016787) (309 aa) fasta scores: E(): 1.2e-68, 56.18% id in 299 aa, and to Pseudomonas glumae lys-r type regulatory protein toxR SWALL:Q8RS39 (EMBL:AB040403) (333 aa) fasta scores: E(): 9.1e-65, 55.1% id in 294 aa.
 
     0.614
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
  
  
 0.578
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
    0.573
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
  
    0.569
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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